miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18480 5' -59.2 NC_004681.1 + 41964 0.66 0.603815
Target:  5'- cGCCUgcuuaaccggCGCUGACcugaccuacGCGGgGGCgAUCUCg -3'
miRNA:   3'- -CGGGa---------GCGACUGc--------UGCCgCCG-UAGAG- -5'
18480 5' -59.2 NC_004681.1 + 23669 0.66 0.587137
Target:  5'- aGCCCUCgugGCUGACGAacacugugccagagaCGGUGGUg---- -3'
miRNA:   3'- -CGGGAG---CGACUGCU---------------GCCGCCGuagag -5'
18480 5' -59.2 NC_004681.1 + 69213 0.66 0.58298
Target:  5'- gGCCagggCGCgGGCGA-GGCGGCGcUUCa -3'
miRNA:   3'- -CGGga--GCGaCUGCUgCCGCCGUaGAG- -5'
18480 5' -59.2 NC_004681.1 + 14572 0.66 0.572614
Target:  5'- cGCCCUgcucggCGgaGGCGGCGcgcGCGGCGUucgcCUCc -3'
miRNA:   3'- -CGGGA------GCgaCUGCUGC---CGCCGUA----GAG- -5'
18480 5' -59.2 NC_004681.1 + 51544 0.67 0.562292
Target:  5'- uGCCUggcuUUGUccuUGACGAUGGUGGCGUacgUCg -3'
miRNA:   3'- -CGGG----AGCG---ACUGCUGCCGCCGUAg--AG- -5'
18480 5' -59.2 NC_004681.1 + 62952 0.67 0.552022
Target:  5'- uCCUUCgGCgguggUGGCGGCGGCGGCGc--- -3'
miRNA:   3'- cGGGAG-CG-----ACUGCUGCCGCCGUagag -5'
18480 5' -59.2 NC_004681.1 + 30243 0.67 0.541808
Target:  5'- cGCCCgccacaGC-GGCGGCGGCcgguacGGCGUCg- -3'
miRNA:   3'- -CGGGag----CGaCUGCUGCCG------CCGUAGag -5'
18480 5' -59.2 NC_004681.1 + 18721 0.67 0.541808
Target:  5'- aGCagaacaUCGCcaagGGCGACGGCGGCGa--- -3'
miRNA:   3'- -CGgg----AGCGa---CUGCUGCCGCCGUagag -5'
18480 5' -59.2 NC_004681.1 + 7605 0.67 0.521578
Target:  5'- cGCCCgcgacuUCGCcGACGAUGGCcagacCGUCUCc -3'
miRNA:   3'- -CGGG------AGCGaCUGCUGCCGcc---GUAGAG- -5'
18480 5' -59.2 NC_004681.1 + 7443 0.67 0.511573
Target:  5'- aGgCUUCGCc-GCGGCGGCGGgGUCa- -3'
miRNA:   3'- -CgGGAGCGacUGCUGCCGCCgUAGag -5'
18480 5' -59.2 NC_004681.1 + 3831 0.68 0.491809
Target:  5'- aUUCUUGcCUGGCaaGACGGCGGCAUgugggaCUCg -3'
miRNA:   3'- cGGGAGC-GACUG--CUGCCGCCGUA------GAG- -5'
18480 5' -59.2 NC_004681.1 + 3046 0.69 0.444048
Target:  5'- gGUCCUCGCUGGUGAacuCGGCGcGCGUg-- -3'
miRNA:   3'- -CGGGAGCGACUGCU---GCCGC-CGUAgag -5'
18480 5' -59.2 NC_004681.1 + 26244 0.69 0.444048
Target:  5'- cCCCUaCGCgguggggcaUGACGGacuccuCGGCGGCAUCa- -3'
miRNA:   3'- cGGGA-GCG---------ACUGCU------GCCGCCGUAGag -5'
18480 5' -59.2 NC_004681.1 + 47215 0.69 0.416673
Target:  5'- gGCCCucggcguucucgUCGCUcaGCGGCGGCGGC-UCg- -3'
miRNA:   3'- -CGGG------------AGCGAc-UGCUGCCGCCGuAGag -5'
18480 5' -59.2 NC_004681.1 + 47876 0.69 0.399005
Target:  5'- gGCgCCUCGCgGGUGAauGCGGCAUCg- -3'
miRNA:   3'- -CG-GGAGCGaCUGCUgcCGCCGUAGag -5'
18480 5' -59.2 NC_004681.1 + 16081 0.7 0.365143
Target:  5'- cGCCCUCGgUGGCGucaccaccGCGGCGcGCAc--- -3'
miRNA:   3'- -CGGGAGCgACUGC--------UGCCGC-CGUagag -5'
18480 5' -59.2 NC_004681.1 + 22589 0.7 0.348973
Target:  5'- cGUCCgaggCGCcGAUGAUGGUGGCGUUg- -3'
miRNA:   3'- -CGGGa---GCGaCUGCUGCCGCCGUAGag -5'
18480 5' -59.2 NC_004681.1 + 39289 0.72 0.296468
Target:  5'- cGUCCUCGacguCGAgGGCGaGCAUCUCc -3'
miRNA:   3'- -CGGGAGCgacuGCUgCCGC-CGUAGAG- -5'
18480 5' -59.2 NC_004681.1 + 28127 0.72 0.289489
Target:  5'- gGCCC-CGCgggcaACGGCGGCGGCGgaUCg -3'
miRNA:   3'- -CGGGaGCGac---UGCUGCCGCCGUagAG- -5'
18480 5' -59.2 NC_004681.1 + 25193 0.72 0.262861
Target:  5'- gGCCCcuggcggCGCUGGCaACGGCGGCGaccgcuUCUUc -3'
miRNA:   3'- -CGGGa------GCGACUGcUGCCGCCGU------AGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.