Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18480 | 5' | -59.2 | NC_004681.1 | + | 50131 | 1.1 | 0.000533 |
Target: 5'- cGCCCUCGCUGACGACGGCGGCAUCUCc -3' miRNA: 3'- -CGGGAGCGACUGCUGCCGCCGUAGAG- -5' |
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18480 | 5' | -59.2 | NC_004681.1 | + | 41964 | 0.66 | 0.603815 |
Target: 5'- cGCCUgcuuaaccggCGCUGACcugaccuacGCGGgGGCgAUCUCg -3' miRNA: 3'- -CGGGa---------GCGACUGc--------UGCCgCCG-UAGAG- -5' |
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18480 | 5' | -59.2 | NC_004681.1 | + | 62952 | 0.67 | 0.552022 |
Target: 5'- uCCUUCgGCgguggUGGCGGCGGCGGCGc--- -3' miRNA: 3'- cGGGAG-CG-----ACUGCUGCCGCCGUagag -5' |
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18480 | 5' | -59.2 | NC_004681.1 | + | 30243 | 0.67 | 0.541808 |
Target: 5'- cGCCCgccacaGC-GGCGGCGGCcgguacGGCGUCg- -3' miRNA: 3'- -CGGGag----CGaCUGCUGCCG------CCGUAGag -5' |
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18480 | 5' | -59.2 | NC_004681.1 | + | 18721 | 0.67 | 0.541808 |
Target: 5'- aGCagaacaUCGCcaagGGCGACGGCGGCGa--- -3' miRNA: 3'- -CGgg----AGCGa---CUGCUGCCGCCGUagag -5' |
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18480 | 5' | -59.2 | NC_004681.1 | + | 7605 | 0.67 | 0.521578 |
Target: 5'- cGCCCgcgacuUCGCcGACGAUGGCcagacCGUCUCc -3' miRNA: 3'- -CGGG------AGCGaCUGCUGCCGcc---GUAGAG- -5' |
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18480 | 5' | -59.2 | NC_004681.1 | + | 3831 | 0.68 | 0.491809 |
Target: 5'- aUUCUUGcCUGGCaaGACGGCGGCAUgugggaCUCg -3' miRNA: 3'- cGGGAGC-GACUG--CUGCCGCCGUA------GAG- -5' |
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18480 | 5' | -59.2 | NC_004681.1 | + | 26244 | 0.69 | 0.444048 |
Target: 5'- cCCCUaCGCgguggggcaUGACGGacuccuCGGCGGCAUCa- -3' miRNA: 3'- cGGGA-GCG---------ACUGCU------GCCGCCGUAGag -5' |
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18480 | 5' | -59.2 | NC_004681.1 | + | 16081 | 0.7 | 0.365143 |
Target: 5'- cGCCCUCGgUGGCGucaccaccGCGGCGcGCAc--- -3' miRNA: 3'- -CGGGAGCgACUGC--------UGCCGC-CGUagag -5' |
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18480 | 5' | -59.2 | NC_004681.1 | + | 28127 | 0.72 | 0.289489 |
Target: 5'- gGCCC-CGCgggcaACGGCGGCGGCGgaUCg -3' miRNA: 3'- -CGGGaGCGac---UGCUGCCGCCGUagAG- -5' |
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18480 | 5' | -59.2 | NC_004681.1 | + | 25193 | 0.72 | 0.262861 |
Target: 5'- gGCCCcuggcggCGCUGGCaACGGCGGCGaccgcuUCUUc -3' miRNA: 3'- -CGGGa------GCGACUGcUGCCGCCGU------AGAG- -5' |
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18480 | 5' | -59.2 | NC_004681.1 | + | 8905 | 0.76 | 0.166961 |
Target: 5'- aGCuCCUgGCUGGCGGCGGguacccCGGCGUCa- -3' miRNA: 3'- -CG-GGAgCGACUGCUGCC------GCCGUAGag -5' |
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18480 | 5' | -59.2 | NC_004681.1 | + | 44679 | 0.77 | 0.142716 |
Target: 5'- cUCCUCGaCggcaacGGCGACGGCGGCGUCa- -3' miRNA: 3'- cGGGAGC-Ga-----CUGCUGCCGCCGUAGag -5' |
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18480 | 5' | -59.2 | NC_004681.1 | + | 27615 | 0.84 | 0.041855 |
Target: 5'- aCCCUcgguggCGCUGGCGGCGGCGGCggCUCu -3' miRNA: 3'- cGGGA------GCGACUGCUGCCGCCGuaGAG- -5' |
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18480 | 5' | -59.2 | NC_004681.1 | + | 47215 | 0.69 | 0.416673 |
Target: 5'- gGCCCucggcguucucgUCGCUcaGCGGCGGCGGC-UCg- -3' miRNA: 3'- -CGGG------------AGCGAc-UGCUGCCGCCGuAGag -5' |
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18480 | 5' | -59.2 | NC_004681.1 | + | 47876 | 0.69 | 0.399005 |
Target: 5'- gGCgCCUCGCgGGUGAauGCGGCAUCg- -3' miRNA: 3'- -CG-GGAGCGaCUGCUgcCGCCGUAGag -5' |
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18480 | 5' | -59.2 | NC_004681.1 | + | 22589 | 0.7 | 0.348973 |
Target: 5'- cGUCCgaggCGCcGAUGAUGGUGGCGUUg- -3' miRNA: 3'- -CGGGa---GCGaCUGCUGCCGCCGUAGag -5' |
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18480 | 5' | -59.2 | NC_004681.1 | + | 39289 | 0.72 | 0.296468 |
Target: 5'- cGUCCUCGacguCGAgGGCGaGCAUCUCc -3' miRNA: 3'- -CGGGAGCgacuGCUgCCGC-CGUAGAG- -5' |
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18480 | 5' | -59.2 | NC_004681.1 | + | 45767 | 0.73 | 0.25031 |
Target: 5'- uUCCUCGCgGACaACGGUGGgCGUCUUg -3' miRNA: 3'- cGGGAGCGaCUGcUGCCGCC-GUAGAG- -5' |
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18480 | 5' | -59.2 | NC_004681.1 | + | 23669 | 0.66 | 0.587137 |
Target: 5'- aGCCCUCgugGCUGACGAacacugugccagagaCGGUGGUg---- -3' miRNA: 3'- -CGGGAG---CGACUGCU---------------GCCGCCGuagag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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