miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18481 5' -60 NC_004681.1 + 45713 0.66 0.591507
Target:  5'- gUGGAACucgguaCCCuuGGCCGaCGCGGAGGa -3'
miRNA:   3'- gACCUUG------GGGucCUGGUgGCGCCUCU- -5'
18481 5' -60 NC_004681.1 + 50408 0.66 0.591507
Target:  5'- -gGGGugCCCAuGAguucagcguCgGCCGCGGGGAc -3'
miRNA:   3'- gaCCUugGGGUcCU---------GgUGGCGCCUCU- -5'
18481 5' -60 NC_004681.1 + 68811 0.66 0.591507
Target:  5'- gCUGGugaagGACCCgGGGAguacCUACCG-GGAGGa -3'
miRNA:   3'- -GACC-----UUGGGgUCCU----GGUGGCgCCUCU- -5'
18481 5' -60 NC_004681.1 + 18913 0.66 0.591507
Target:  5'- cCUGGccgguCCCCAGGcucCCGUCGCGG-GAg -3'
miRNA:   3'- -GACCuu---GGGGUCCu--GGUGGCGCCuCU- -5'
18481 5' -60 NC_004681.1 + 34724 0.66 0.589439
Target:  5'- gCUGGAACgugucaCCCaAGGGCCGCauccccaucgagGUGGAGGa -3'
miRNA:   3'- -GACCUUG------GGG-UCCUGGUGg-----------CGCCUCU- -5'
18481 5' -60 NC_004681.1 + 15004 0.66 0.581181
Target:  5'- aCUGGAACUgcgaggcgacgUCGGcGACCugCgagGCGGGGAu -3'
miRNA:   3'- -GACCUUGG-----------GGUC-CUGGugG---CGCCUCU- -5'
18481 5' -60 NC_004681.1 + 48766 0.66 0.581181
Target:  5'- gCUGGc-CCgCCAGGguucccGCCAgCGUGGAGGc -3'
miRNA:   3'- -GACCuuGG-GGUCC------UGGUgGCGCCUCU- -5'
18481 5' -60 NC_004681.1 + 3148 0.66 0.581181
Target:  5'- -aGGAcuGCCaCCAGGcCCuuggcGCCGCGGGu- -3'
miRNA:   3'- gaCCU--UGG-GGUCCuGG-----UGGCGCCUcu -5'
18481 5' -60 NC_004681.1 + 17891 0.66 0.560651
Target:  5'- -aGGAAUUCCuGGGCgGCgGCGGcGAg -3'
miRNA:   3'- gaCCUUGGGGuCCUGgUGgCGCCuCU- -5'
18481 5' -60 NC_004681.1 + 58223 0.66 0.550459
Target:  5'- gUGGAgagGCCggGGGACUACCGCcauGGAGu -3'
miRNA:   3'- gACCU---UGGggUCCUGGUGGCG---CCUCu -5'
18481 5' -60 NC_004681.1 + 12377 0.66 0.539315
Target:  5'- ---aGACCUCGGGuggcaccACCACCGCGGcGAc -3'
miRNA:   3'- gaccUUGGGGUCC-------UGGUGGCGCCuCU- -5'
18481 5' -60 NC_004681.1 + 32232 0.67 0.530255
Target:  5'- gCUGGucguuggCguGGGCCGCCGCGGuGAc -3'
miRNA:   3'- -GACCuugg---GguCCUGGUGGCGCCuCU- -5'
18481 5' -60 NC_004681.1 + 48473 0.67 0.529251
Target:  5'- gCUGGGucauucaGCgCaucaAGGAacUCGCCGCGGAGAa -3'
miRNA:   3'- -GACCU-------UGgGg---UCCU--GGUGGCGCCUCU- -5'
18481 5' -60 NC_004681.1 + 30147 0.67 0.520254
Target:  5'- -gGGAGCUCCGaGGCCgaugGCCGCGGcGGc -3'
miRNA:   3'- gaCCUUGGGGUcCUGG----UGGCGCCuCU- -5'
18481 5' -60 NC_004681.1 + 18050 0.67 0.517268
Target:  5'- -cGGGGCCCaccGGAgCCGCCcucggcacucaccuGCGGGGAc -3'
miRNA:   3'- gaCCUUGGGgu-CCU-GGUGG--------------CGCCUCU- -5'
18481 5' -60 NC_004681.1 + 30825 0.67 0.510327
Target:  5'- cCUGGGccuACCugCCcGGAcCCAUCGUGGAGGa -3'
miRNA:   3'- -GACCU---UGG--GGuCCU-GGUGGCGCCUCU- -5'
18481 5' -60 NC_004681.1 + 59315 0.67 0.510327
Target:  5'- -gGGGACUccugcguggCCAGGACCccggACgGCGGAGc -3'
miRNA:   3'- gaCCUUGG---------GGUCCUGG----UGgCGCCUCu -5'
18481 5' -60 NC_004681.1 + 486 0.67 0.500481
Target:  5'- -cGGugcccuuGCCCCAGGuCUugACCGCGGGc- -3'
miRNA:   3'- gaCCu------UGGGGUCCuGG--UGGCGCCUcu -5'
18481 5' -60 NC_004681.1 + 56274 0.67 0.49072
Target:  5'- -aGGAGCgCgCuGGACUugugGCCGCGGAGc -3'
miRNA:   3'- gaCCUUGgG-GuCCUGG----UGGCGCCUCu -5'
18481 5' -60 NC_004681.1 + 30880 0.67 0.49072
Target:  5'- gCUGGAGCCCCGcGACacccuguaCGCGGAc- -3'
miRNA:   3'- -GACCUUGGGGUcCUGgug-----GCGCCUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.