miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18482 3' -55.2 NC_004681.1 + 57657 0.66 0.817354
Target:  5'- cUUGCCCUuguCCUUGagcUCCGugGCc- -3'
miRNA:   3'- cGACGGGAu--GGAGCaa-AGGCugCGag -5'
18482 3' -55.2 NC_004681.1 + 61255 0.66 0.817354
Target:  5'- aGUUGCCCUggGCgUCGcgg-CGGCGUUCg -3'
miRNA:   3'- -CGACGGGA--UGgAGCaaagGCUGCGAG- -5'
18482 3' -55.2 NC_004681.1 + 67795 0.66 0.817354
Target:  5'- aGCgGCCCUugUcgUCGgugCCGACGUc- -3'
miRNA:   3'- -CGaCGGGAugG--AGCaaaGGCUGCGag -5'
18482 3' -55.2 NC_004681.1 + 23377 0.66 0.789276
Target:  5'- cCUGCCC-GCCUccaCGUUcgCCaGugGCUCc -3'
miRNA:   3'- cGACGGGaUGGA---GCAAa-GG-CugCGAG- -5'
18482 3' -55.2 NC_004681.1 + 41581 0.67 0.759788
Target:  5'- uGUUGCCCUccuucgGCUUCgGUUUCUGuuCGCUUu -3'
miRNA:   3'- -CGACGGGA------UGGAG-CAAAGGCu-GCGAG- -5'
18482 3' -55.2 NC_004681.1 + 40664 0.68 0.70828
Target:  5'- --cGCCguUUGCCUCGg---CGACGCUCg -3'
miRNA:   3'- cgaCGG--GAUGGAGCaaagGCUGCGAG- -5'
18482 3' -55.2 NC_004681.1 + 43865 0.68 0.676432
Target:  5'- cCUGCCCUGCUUCaacUUUCGGCGgugaCUCa -3'
miRNA:   3'- cGACGGGAUGGAGca-AAGGCUGC----GAG- -5'
18482 3' -55.2 NC_004681.1 + 5939 0.69 0.622676
Target:  5'- cGCUGCUgaGCCUCGgggCUgaGGCGCUUc -3'
miRNA:   3'- -CGACGGgaUGGAGCaaaGG--CUGCGAG- -5'
18482 3' -55.2 NC_004681.1 + 63854 0.69 0.601164
Target:  5'- gGCggGCCUUGCCUCGcg-CCGugGUc- -3'
miRNA:   3'- -CGa-CGGGAUGGAGCaaaGGCugCGag -5'
18482 3' -55.2 NC_004681.1 + 50060 0.72 0.456666
Target:  5'- uGCgGCCCU-UCUCGggUCCG-CGCUUg -3'
miRNA:   3'- -CGaCGGGAuGGAGCaaAGGCuGCGAG- -5'
18482 3' -55.2 NC_004681.1 + 50600 1.11 0.001091
Target:  5'- uGCUGCCCUACCUCGUUUCCGACGCUCu -3'
miRNA:   3'- -CGACGGGAUGGAGCAAAGGCUGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.