miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18482 5' -53.7 NC_004681.1 + 14459 0.66 0.879716
Target:  5'- aGGcGAACGCcGCGcgCGccgccuccgccgagcAGGgcGCGCUg -3'
miRNA:   3'- -CC-CUUGCGuCGUuaGC---------------UCCuuCGCGA- -5'
18482 5' -53.7 NC_004681.1 + 40303 0.66 0.876673
Target:  5'- gGGGAGCuCAGUAGUgGGGGcGGUGa- -3'
miRNA:   3'- -CCCUUGcGUCGUUAgCUCCuUCGCga -5'
18482 5' -53.7 NC_004681.1 + 27623 0.66 0.876673
Target:  5'- cGGGAugaaggACGguGCGAccUCGAucuGAGGCGUg -3'
miRNA:   3'- -CCCU------UGCguCGUU--AGCUc--CUUCGCGa -5'
18482 5' -53.7 NC_004681.1 + 57984 0.66 0.868893
Target:  5'- --cGACGCaugGGCAucAggGAGGAGGCGCUc -3'
miRNA:   3'- cccUUGCG---UCGU--UagCUCCUUCGCGA- -5'
18482 5' -53.7 NC_004681.1 + 31220 0.66 0.868893
Target:  5'- aGGAcauCGCAGCGuggcUgGGGGAccGGCGCc -3'
miRNA:   3'- cCCUu--GCGUCGUu---AgCUCCU--UCGCGa -5'
18482 5' -53.7 NC_004681.1 + 39884 0.66 0.866511
Target:  5'- uGGGAggcgauggucGCGCGGCGGgcgaggucuUCGGGGGucaugcugauccucAGUGCa -3'
miRNA:   3'- -CCCU----------UGCGUCGUU---------AGCUCCU--------------UCGCGa -5'
18482 5' -53.7 NC_004681.1 + 36029 0.66 0.860871
Target:  5'- cGGAAUGgAGCAAuUCGGGaugcgaGAGGCGUa -3'
miRNA:   3'- cCCUUGCgUCGUU-AGCUC------CUUCGCGa -5'
18482 5' -53.7 NC_004681.1 + 18296 0.66 0.860871
Target:  5'- cGGGggUGC-GC---CG-GGAGGCGCUc -3'
miRNA:   3'- -CCCuuGCGuCGuuaGCuCCUUCGCGA- -5'
18482 5' -53.7 NC_004681.1 + 61416 0.66 0.860871
Target:  5'- cGGGGGCgGCAGCuccUCGuucaAGGAAGC-Cg -3'
miRNA:   3'- -CCCUUG-CGUCGuu-AGC----UCCUUCGcGa -5'
18482 5' -53.7 NC_004681.1 + 41901 0.66 0.858418
Target:  5'- cGGGAGgcggcgucuuccacUGCGGCGcgaaggccGUCGAaccuGGAGGCGUg -3'
miRNA:   3'- -CCCUU--------------GCGUCGU--------UAGCU----CCUUCGCGa -5'
18482 5' -53.7 NC_004681.1 + 28024 0.67 0.835427
Target:  5'- -cGGugGCAGCAAgacCGAcGGcgcuGGCGCUg -3'
miRNA:   3'- ccCUugCGUCGUUa--GCU-CCu---UCGCGA- -5'
18482 5' -53.7 NC_004681.1 + 64122 0.67 0.8174
Target:  5'- aGGGGACugaGGCuGUCaGGGGAGCGUc -3'
miRNA:   3'- -CCCUUGcg-UCGuUAGcUCCUUCGCGa -5'
18482 5' -53.7 NC_004681.1 + 18736 0.67 0.808095
Target:  5'- -aGGGCGaCGGCGG-CGAGGccGCGCg -3'
miRNA:   3'- ccCUUGC-GUCGUUaGCUCCuuCGCGa -5'
18482 5' -53.7 NC_004681.1 + 75368 0.67 0.808095
Target:  5'- uGGGAGCGCua----CGAGGcacgcuGAGCGCUa -3'
miRNA:   3'- -CCCUUGCGucguuaGCUCC------UUCGCGA- -5'
18482 5' -53.7 NC_004681.1 + 20258 0.67 0.798608
Target:  5'- -cGAGCGCAGC---CGGGGcAGCGUg -3'
miRNA:   3'- ccCUUGCGUCGuuaGCUCCuUCGCGa -5'
18482 5' -53.7 NC_004681.1 + 72238 0.67 0.798608
Target:  5'- ---cGCGCGGCGGUUGAuGGAcuccacgauGGCGCg -3'
miRNA:   3'- cccuUGCGUCGUUAGCU-CCU---------UCGCGa -5'
18482 5' -53.7 NC_004681.1 + 7390 0.68 0.779131
Target:  5'- uGGcgUGCAGCucGUCGcAGGcGGCGCa -3'
miRNA:   3'- cCCuuGCGUCGu-UAGC-UCCuUCGCGa -5'
18482 5' -53.7 NC_004681.1 + 19666 0.68 0.769163
Target:  5'- -cGggUGCGGgGAaCG-GGAAGCGCUg -3'
miRNA:   3'- ccCuuGCGUCgUUaGCuCCUUCGCGA- -5'
18482 5' -53.7 NC_004681.1 + 20151 0.68 0.759056
Target:  5'- cGGGucCGUAGCA---GAGGuAGCGCg -3'
miRNA:   3'- -CCCuuGCGUCGUuagCUCCuUCGCGa -5'
18482 5' -53.7 NC_004681.1 + 42610 0.68 0.748822
Target:  5'- cGGGGGCGCauuccugccAGCGGUCGGGcucGAAGC-CUu -3'
miRNA:   3'- -CCCUUGCG---------UCGUUAGCUC---CUUCGcGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.