miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18482 5' -53.7 NC_004681.1 + 779 0.69 0.728014
Target:  5'- cGGGGugGCAGa-----AGGAAGUGCUg -3'
miRNA:   3'- -CCCUugCGUCguuagcUCCUUCGCGA- -5'
18482 5' -53.7 NC_004681.1 + 69218 0.69 0.69505
Target:  5'- aGGGAggccaggGCGCGGg---CGAGGcGGCGCUu -3'
miRNA:   3'- -CCCU-------UGCGUCguuaGCUCCuUCGCGA- -5'
18482 5' -53.7 NC_004681.1 + 29853 0.69 0.685357
Target:  5'- -----gGCAGCAgGUCGcGGAAGCGCUc -3'
miRNA:   3'- cccuugCGUCGU-UAGCuCCUUCGCGA- -5'
18482 5' -53.7 NC_004681.1 + 56632 0.7 0.674541
Target:  5'- cGGGGucuucACcCAGCGGUUGAcGAGGCGCUc -3'
miRNA:   3'- -CCCU-----UGcGUCGUUAGCUcCUUCGCGA- -5'
18482 5' -53.7 NC_004681.1 + 57509 0.7 0.630984
Target:  5'- aGGGuGACGcCAGC-AUCGcGGAGcGCGCUg -3'
miRNA:   3'- -CCC-UUGC-GUCGuUAGCuCCUU-CGCGA- -5'
18482 5' -53.7 NC_004681.1 + 71275 0.7 0.630984
Target:  5'- aGGGAgacuggACuCAGCAGagCGAGGAcAGCGCa -3'
miRNA:   3'- -CCCU------UGcGUCGUUa-GCUCCU-UCGCGa -5'
18482 5' -53.7 NC_004681.1 + 52430 0.71 0.609172
Target:  5'- aGGuGCGCgaGGCGAUUGAGGAA-CGCUu -3'
miRNA:   3'- cCCuUGCG--UCGUUAGCUCCUUcGCGA- -5'
18482 5' -53.7 NC_004681.1 + 54130 0.73 0.482161
Target:  5'- cGGGcGCGCGGCGGacccUCGuGGAAGCcaGCa -3'
miRNA:   3'- -CCCuUGCGUCGUU----AGCuCCUUCG--CGa -5'
18482 5' -53.7 NC_004681.1 + 21550 0.74 0.40492
Target:  5'- cGGGGGCGUAgGCAuugccgggGUUGAGGAacGGCGCc -3'
miRNA:   3'- -CCCUUGCGU-CGU--------UAGCUCCU--UCGCGa -5'
18482 5' -53.7 NC_004681.1 + 39982 0.77 0.297396
Target:  5'- gGGGGucucCGCccGCcuGGUCGAGGAAGCGCUg -3'
miRNA:   3'- -CCCUu---GCGu-CG--UUAGCUCCUUCGCGA- -5'
18482 5' -53.7 NC_004681.1 + 12304 0.83 0.12768
Target:  5'- cGGGGAUGCGGCGcgCGGGGAAGCcCg -3'
miRNA:   3'- -CCCUUGCGUCGUuaGCUCCUUCGcGa -5'
18482 5' -53.7 NC_004681.1 + 50637 1.11 0.001548
Target:  5'- aGGGAACGCAGCAAUCGAGGAAGCGCUg -3'
miRNA:   3'- -CCCUUGCGUCGUUAGCUCCUUCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.