Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18482 | 5' | -53.7 | NC_004681.1 | + | 779 | 0.69 | 0.728014 |
Target: 5'- cGGGGugGCAGa-----AGGAAGUGCUg -3' miRNA: 3'- -CCCUugCGUCguuagcUCCUUCGCGA- -5' |
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18482 | 5' | -53.7 | NC_004681.1 | + | 7390 | 0.68 | 0.779131 |
Target: 5'- uGGcgUGCAGCucGUCGcAGGcGGCGCa -3' miRNA: 3'- cCCuuGCGUCGu-UAGC-UCCuUCGCGa -5' |
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18482 | 5' | -53.7 | NC_004681.1 | + | 12304 | 0.83 | 0.12768 |
Target: 5'- cGGGGAUGCGGCGcgCGGGGAAGCcCg -3' miRNA: 3'- -CCCUUGCGUCGUuaGCUCCUUCGcGa -5' |
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18482 | 5' | -53.7 | NC_004681.1 | + | 14459 | 0.66 | 0.879716 |
Target: 5'- aGGcGAACGCcGCGcgCGccgccuccgccgagcAGGgcGCGCUg -3' miRNA: 3'- -CC-CUUGCGuCGUuaGC---------------UCCuuCGCGA- -5' |
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18482 | 5' | -53.7 | NC_004681.1 | + | 18296 | 0.66 | 0.860871 |
Target: 5'- cGGGggUGC-GC---CG-GGAGGCGCUc -3' miRNA: 3'- -CCCuuGCGuCGuuaGCuCCUUCGCGA- -5' |
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18482 | 5' | -53.7 | NC_004681.1 | + | 18736 | 0.67 | 0.808095 |
Target: 5'- -aGGGCGaCGGCGG-CGAGGccGCGCg -3' miRNA: 3'- ccCUUGC-GUCGUUaGCUCCuuCGCGa -5' |
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18482 | 5' | -53.7 | NC_004681.1 | + | 19666 | 0.68 | 0.769163 |
Target: 5'- -cGggUGCGGgGAaCG-GGAAGCGCUg -3' miRNA: 3'- ccCuuGCGUCgUUaGCuCCUUCGCGA- -5' |
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18482 | 5' | -53.7 | NC_004681.1 | + | 20151 | 0.68 | 0.759056 |
Target: 5'- cGGGucCGUAGCA---GAGGuAGCGCg -3' miRNA: 3'- -CCCuuGCGUCGUuagCUCCuUCGCGa -5' |
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18482 | 5' | -53.7 | NC_004681.1 | + | 20258 | 0.67 | 0.798608 |
Target: 5'- -cGAGCGCAGC---CGGGGcAGCGUg -3' miRNA: 3'- ccCUUGCGUCGuuaGCUCCuUCGCGa -5' |
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18482 | 5' | -53.7 | NC_004681.1 | + | 21550 | 0.74 | 0.40492 |
Target: 5'- cGGGGGCGUAgGCAuugccgggGUUGAGGAacGGCGCc -3' miRNA: 3'- -CCCUUGCGU-CGU--------UAGCUCCU--UCGCGa -5' |
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18482 | 5' | -53.7 | NC_004681.1 | + | 27623 | 0.66 | 0.876673 |
Target: 5'- cGGGAugaaggACGguGCGAccUCGAucuGAGGCGUg -3' miRNA: 3'- -CCCU------UGCguCGUU--AGCUc--CUUCGCGa -5' |
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18482 | 5' | -53.7 | NC_004681.1 | + | 28024 | 0.67 | 0.835427 |
Target: 5'- -cGGugGCAGCAAgacCGAcGGcgcuGGCGCUg -3' miRNA: 3'- ccCUugCGUCGUUa--GCU-CCu---UCGCGA- -5' |
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18482 | 5' | -53.7 | NC_004681.1 | + | 29853 | 0.69 | 0.685357 |
Target: 5'- -----gGCAGCAgGUCGcGGAAGCGCUc -3' miRNA: 3'- cccuugCGUCGU-UAGCuCCUUCGCGA- -5' |
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18482 | 5' | -53.7 | NC_004681.1 | + | 31220 | 0.66 | 0.868893 |
Target: 5'- aGGAcauCGCAGCGuggcUgGGGGAccGGCGCc -3' miRNA: 3'- cCCUu--GCGUCGUu---AgCUCCU--UCGCGa -5' |
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18482 | 5' | -53.7 | NC_004681.1 | + | 36029 | 0.66 | 0.860871 |
Target: 5'- cGGAAUGgAGCAAuUCGGGaugcgaGAGGCGUa -3' miRNA: 3'- cCCUUGCgUCGUU-AGCUC------CUUCGCGa -5' |
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18482 | 5' | -53.7 | NC_004681.1 | + | 39884 | 0.66 | 0.866511 |
Target: 5'- uGGGAggcgauggucGCGCGGCGGgcgaggucuUCGGGGGucaugcugauccucAGUGCa -3' miRNA: 3'- -CCCU----------UGCGUCGUU---------AGCUCCU--------------UCGCGa -5' |
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18482 | 5' | -53.7 | NC_004681.1 | + | 39982 | 0.77 | 0.297396 |
Target: 5'- gGGGGucucCGCccGCcuGGUCGAGGAAGCGCUg -3' miRNA: 3'- -CCCUu---GCGu-CG--UUAGCUCCUUCGCGA- -5' |
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18482 | 5' | -53.7 | NC_004681.1 | + | 40303 | 0.66 | 0.876673 |
Target: 5'- gGGGAGCuCAGUAGUgGGGGcGGUGa- -3' miRNA: 3'- -CCCUUGcGUCGUUAgCUCCuUCGCga -5' |
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18482 | 5' | -53.7 | NC_004681.1 | + | 41901 | 0.66 | 0.858418 |
Target: 5'- cGGGAGgcggcgucuuccacUGCGGCGcgaaggccGUCGAaccuGGAGGCGUg -3' miRNA: 3'- -CCCUU--------------GCGUCGU--------UAGCU----CCUUCGCGa -5' |
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18482 | 5' | -53.7 | NC_004681.1 | + | 42610 | 0.68 | 0.748822 |
Target: 5'- cGGGGGCGCauuccugccAGCGGUCGGGcucGAAGC-CUu -3' miRNA: 3'- -CCCUUGCG---------UCGUUAGCUC---CUUCGcGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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