miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18483 3' -52.9 NC_004681.1 + 37505 0.66 0.924996
Target:  5'- cGCggGCAUCa--GAGCacCCCCGACUUCu -3'
miRNA:   3'- -CGa-UGUAGaugCUUGa-GGGGCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 49123 0.66 0.924996
Target:  5'- cGCUugGagUGCGAAUUCCgCGAUgCg -3'
miRNA:   3'- -CGAugUagAUGCUUGAGGgGCUGgGg -5'
18483 3' -52.9 NC_004681.1 + 40331 0.66 0.919157
Target:  5'- uGCU-CGUCUauggcucccGCGcaaccgucaAGCUCCUccaCGACCCCa -3'
miRNA:   3'- -CGAuGUAGA---------UGC---------UUGAGGG---GCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 57824 0.66 0.919157
Target:  5'- aCUGCcUCUGCGGuGCUCUggUUGACCCa -3'
miRNA:   3'- cGAUGuAGAUGCU-UGAGG--GGCUGGGg -5'
18483 3' -52.9 NC_004681.1 + 55127 0.66 0.919157
Target:  5'- cGCUACGUCa--GAAgUUCCCCGGgCgCg -3'
miRNA:   3'- -CGAUGUAGaugCUU-GAGGGGCUgGgG- -5'
18483 3' -52.9 NC_004681.1 + 49679 0.66 0.913052
Target:  5'- gGCUAC---UGCGcGCUCUgCGGCCUCu -3'
miRNA:   3'- -CGAUGuagAUGCuUGAGGgGCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 41246 0.66 0.9118
Target:  5'- uCUGCGUCgguccacuGCUCCUCauuuGACCCCa -3'
miRNA:   3'- cGAUGUAGaugcu---UGAGGGG----CUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 5489 0.66 0.906684
Target:  5'- cGCUggACAUCUACGGcgagACguaCCUGGCCauCCa -3'
miRNA:   3'- -CGA--UGUAGAUGCU----UGag-GGGCUGG--GG- -5'
18483 3' -52.9 NC_004681.1 + 19558 0.66 0.906684
Target:  5'- aGCgGCAUCca-GcGCUUCCCGuuCCCCg -3'
miRNA:   3'- -CGaUGUAGaugCuUGAGGGGCu-GGGG- -5'
18483 3' -52.9 NC_004681.1 + 35423 0.66 0.906684
Target:  5'- aCUAC-UCgaaagACGGugAUUCCCaCGAUCCCg -3'
miRNA:   3'- cGAUGuAGa----UGCU--UGAGGG-GCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 23568 0.66 0.906684
Target:  5'- ---cCGUCUGCGAugaccuugGCggCgCCCGACCCa -3'
miRNA:   3'- cgauGUAGAUGCU--------UGa-G-GGGCUGGGg -5'
18483 3' -52.9 NC_004681.1 + 22307 0.66 0.900053
Target:  5'- aGUU-CGUgaUGCGAACuUCCCCGuCCCa -3'
miRNA:   3'- -CGAuGUAg-AUGCUUG-AGGGGCuGGGg -5'
18483 3' -52.9 NC_004681.1 + 44823 0.66 0.900053
Target:  5'- --gACAUCgagACGGGCggcCCCCGugUCg -3'
miRNA:   3'- cgaUGUAGa--UGCUUGa--GGGGCugGGg -5'
18483 3' -52.9 NC_004681.1 + 56150 0.67 0.88602
Target:  5'- cGCcGCAUCaagGCGAugaaGCUCCgCGGCCa- -3'
miRNA:   3'- -CGaUGUAGa--UGCU----UGAGGgGCUGGgg -5'
18483 3' -52.9 NC_004681.1 + 31444 0.67 0.870987
Target:  5'- uGCgACAugaacUCUGCGGACggCCUGACCgCa -3'
miRNA:   3'- -CGaUGU-----AGAUGCUUGagGGGCUGGgG- -5'
18483 3' -52.9 NC_004681.1 + 9925 0.67 0.863109
Target:  5'- uGCgGCcgCUGCGGACaaccuuggUCUCGACCUCg -3'
miRNA:   3'- -CGaUGuaGAUGCUUGa-------GGGGCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 63145 0.67 0.863109
Target:  5'- gGgUGgGUCUGCGAcgACUCgCCCcuuCCCCc -3'
miRNA:   3'- -CgAUgUAGAUGCU--UGAG-GGGcu-GGGG- -5'
18483 3' -52.9 NC_004681.1 + 34127 0.68 0.855
Target:  5'- --cACAgauggACGAACUCCgCC-ACCCCg -3'
miRNA:   3'- cgaUGUaga--UGCUUGAGG-GGcUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 51404 0.68 0.846665
Target:  5'- --gACGUCgGCGGACUCaCCGGCCa- -3'
miRNA:   3'- cgaUGUAGaUGCUUGAGgGGCUGGgg -5'
18483 3' -52.9 NC_004681.1 + 7304 0.68 0.846665
Target:  5'- aGCUGCA-CgccaGCGAcguuccAC-CCCCGGCaCCCg -3'
miRNA:   3'- -CGAUGUaGa---UGCU------UGaGGGGCUG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.