Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18483 | 3' | -52.9 | NC_004681.1 | + | 39282 | 0.68 | 0.829354 |
Target: 5'- --gACGUCgaggGCGAGCaucUCCgCGGCCCg -3' miRNA: 3'- cgaUGUAGa---UGCUUG---AGGgGCUGGGg -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 51404 | 0.68 | 0.846665 |
Target: 5'- --gACGUCgGCGGACUCaCCGGCCa- -3' miRNA: 3'- cgaUGUAGaUGCUUGAGgGGCUGGgg -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 34127 | 0.68 | 0.855 |
Target: 5'- --cACAgauggACGAACUCCgCC-ACCCCg -3' miRNA: 3'- cgaUGUaga--UGCUUGAGG-GGcUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 7304 | 0.68 | 0.846665 |
Target: 5'- aGCUGCA-CgccaGCGAcguuccAC-CCCCGGCaCCCg -3' miRNA: 3'- -CGAUGUaGa---UGCU------UGaGGGGCUG-GGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 35376 | 0.68 | 0.835507 |
Target: 5'- cGCUGCGUCcaagccaccgguggcCGGAUUCCUCGACgggcaCCCa -3' miRNA: 3'- -CGAUGUAGau-------------GCUUGAGGGGCUG-----GGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 63417 | 0.68 | 0.829354 |
Target: 5'- aCUGCGguccUGAAUUCCCUGGCCaCCa -3' miRNA: 3'- cGAUGUagauGCUUGAGGGGCUGG-GG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 31393 | 0.68 | 0.811243 |
Target: 5'- gGCUACGgggCgcgcgACGGACUgCCCGAuggugcagcUCCCu -3' miRNA: 3'- -CGAUGUa--Ga----UGCUUGAgGGGCU---------GGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 54731 | 0.69 | 0.801911 |
Target: 5'- cGCUACGUCUccgACGAuga-CCaGGCCCCc -3' miRNA: 3'- -CGAUGUAGA---UGCUugagGGgCUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 45025 | 0.69 | 0.782744 |
Target: 5'- gGCUccACcgCguggggGCGAGCUCUuuGGCCUCu -3' miRNA: 3'- -CGA--UGuaGa-----UGCUUGAGGggCUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 26195 | 0.69 | 0.782744 |
Target: 5'- cGCUGgGUCUgACGGAaacgUCCUGGCCCg -3' miRNA: 3'- -CGAUgUAGA-UGCUUga--GGGGCUGGGg -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 40958 | 0.69 | 0.801911 |
Target: 5'- aGCaGCAUCUGC-AGCauggCCuuGACCUCg -3' miRNA: 3'- -CGaUGUAGAUGcUUGa---GGggCUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 61061 | 0.7 | 0.732377 |
Target: 5'- aGgUACAUCUcguCGGcacGCUgaCCgCCGACCCCg -3' miRNA: 3'- -CgAUGUAGAu--GCU---UGA--GG-GGCUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 62112 | 0.7 | 0.75289 |
Target: 5'- uGCUGCAgUCgguggACGAGCgCaucaUCGGCCCCg -3' miRNA: 3'- -CGAUGU-AGa----UGCUUGaGg---GGCUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 3508 | 0.7 | 0.742687 |
Target: 5'- cGC-ACGUCUuccucgccGgGAAgUCCCUGACUCCg -3' miRNA: 3'- -CGaUGUAGA--------UgCUUgAGGGGCUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 32318 | 0.7 | 0.736513 |
Target: 5'- cGCUGCcgCUGCGAuggccuGCUCCaCCagguugccgaugaccGugCCCg -3' miRNA: 3'- -CGAUGuaGAUGCU------UGAGG-GG---------------CugGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 9119 | 0.71 | 0.679588 |
Target: 5'- gGCUcugGCGU-UGCGGGCUCguaCCCGACCgCCg -3' miRNA: 3'- -CGA---UGUAgAUGCUUGAG---GGGCUGG-GG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 62487 | 0.71 | 0.658094 |
Target: 5'- ----gGUCUACGAACUCCUgaucaUGGCCCa -3' miRNA: 3'- cgaugUAGAUGCUUGAGGG-----GCUGGGg -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 10166 | 0.71 | 0.700908 |
Target: 5'- gGCcuCAUCUucgacACGAccggcCUCCCCGGCUCCg -3' miRNA: 3'- -CGauGUAGA-----UGCUu----GAGGGGCUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 39671 | 0.72 | 0.625704 |
Target: 5'- ---uCGUCcgaUGCGAGCUCCUCGGCCgCg -3' miRNA: 3'- cgauGUAG---AUGCUUGAGGGGCUGGgG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 24633 | 0.72 | 0.603044 |
Target: 5'- gGCUGCAUCccGCGAcaacaccGCggaCCCCGACaaCCCg -3' miRNA: 3'- -CGAUGUAGa-UGCU-------UGa--GGGGCUG--GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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