miRNA display CGI


Results 41 - 47 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18483 3' -52.9 NC_004681.1 + 67303 0.73 0.571942
Target:  5'- --gGCAUCUcgcgugagguCGAACUCCUCGACCUg -3'
miRNA:   3'- cgaUGUAGAu---------GCUUGAGGGGCUGGGg -5'
18483 3' -52.9 NC_004681.1 + 25745 0.73 0.571942
Target:  5'- --gGCAUCUccaccACGGGCgugCCgCUGACCCCg -3'
miRNA:   3'- cgaUGUAGA-----UGCUUGa--GG-GGCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 16282 0.73 0.571942
Target:  5'- gGC-GCAgggCUACcAGCUCCCCGAgggcauCCCCg -3'
miRNA:   3'- -CGaUGUa--GAUGcUUGAGGGGCU------GGGG- -5'
18483 3' -52.9 NC_004681.1 + 66774 0.75 0.430187
Target:  5'- cCUACAUCgACGcugagcACUCCCUGgACCCCg -3'
miRNA:   3'- cGAUGUAGaUGCu-----UGAGGGGC-UGGGG- -5'
18483 3' -52.9 NC_004681.1 + 64303 0.75 0.44925
Target:  5'- gGCUACGacaaCcACGAAUUCCCCGACUUCc -3'
miRNA:   3'- -CGAUGUa---GaUGCUUGAGGGGCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 21246 0.76 0.393534
Target:  5'- uCUGCAUCUcACGGccagccugugGCUCCCuggCGACCCCc -3'
miRNA:   3'- cGAUGUAGA-UGCU----------UGAGGG---GCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 50710 1.15 0.001214
Target:  5'- gGCUACAUCUACGAACUCCCCGACCCCg -3'
miRNA:   3'- -CGAUGUAGAUGCUUGAGGGGCUGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.