Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18483 | 3' | -52.9 | NC_004681.1 | + | 67303 | 0.73 | 0.571942 |
Target: 5'- --gGCAUCUcgcgugagguCGAACUCCUCGACCUg -3' miRNA: 3'- cgaUGUAGAu---------GCUUGAGGGGCUGGGg -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 25745 | 0.73 | 0.571942 |
Target: 5'- --gGCAUCUccaccACGGGCgugCCgCUGACCCCg -3' miRNA: 3'- cgaUGUAGA-----UGCUUGa--GG-GGCUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 16282 | 0.73 | 0.571942 |
Target: 5'- gGC-GCAgggCUACcAGCUCCCCGAgggcauCCCCg -3' miRNA: 3'- -CGaUGUa--GAUGcUUGAGGGGCU------GGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 66774 | 0.75 | 0.430187 |
Target: 5'- cCUACAUCgACGcugagcACUCCCUGgACCCCg -3' miRNA: 3'- cGAUGUAGaUGCu-----UGAGGGGC-UGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 64303 | 0.75 | 0.44925 |
Target: 5'- gGCUACGacaaCcACGAAUUCCCCGACUUCc -3' miRNA: 3'- -CGAUGUa---GaUGCUUGAGGGGCUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 21246 | 0.76 | 0.393534 |
Target: 5'- uCUGCAUCUcACGGccagccugugGCUCCCuggCGACCCCc -3' miRNA: 3'- cGAUGUAGA-UGCU----------UGAGGG---GCUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 50710 | 1.15 | 0.001214 |
Target: 5'- gGCUACAUCUACGAACUCCCCGACCCCg -3' miRNA: 3'- -CGAUGUAGAUGCUUGAGGGGCUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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