miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18483 3' -52.9 NC_004681.1 + 39282 0.68 0.829354
Target:  5'- --gACGUCgaggGCGAGCaucUCCgCGGCCCg -3'
miRNA:   3'- cgaUGUAGa---UGCUUG---AGGgGCUGGGg -5'
18483 3' -52.9 NC_004681.1 + 51404 0.68 0.846665
Target:  5'- --gACGUCgGCGGACUCaCCGGCCa- -3'
miRNA:   3'- cgaUGUAGaUGCUUGAGgGGCUGGgg -5'
18483 3' -52.9 NC_004681.1 + 7677 0.68 0.820394
Target:  5'- gGUgcCAUC-ACGGcCUCCCCGGCCguCCu -3'
miRNA:   3'- -CGauGUAGaUGCUuGAGGGGCUGG--GG- -5'
18483 3' -52.9 NC_004681.1 + 62391 0.68 0.820394
Target:  5'- cGCUucCAUCccgcguCGAACUCCUCGgcggugaucuuGCCCCc -3'
miRNA:   3'- -CGAu-GUAGau----GCUUGAGGGGC-----------UGGGG- -5'
18483 3' -52.9 NC_004681.1 + 34127 0.68 0.855
Target:  5'- --cACAgauggACGAACUCCgCC-ACCCCg -3'
miRNA:   3'- cgaUGUaga--UGCUUGAGG-GGcUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 7304 0.68 0.846665
Target:  5'- aGCUGCA-CgccaGCGAcguuccAC-CCCCGGCaCCCg -3'
miRNA:   3'- -CGAUGUaGa---UGCU------UGaGGGGCUG-GGG- -5'
18483 3' -52.9 NC_004681.1 + 24918 0.68 0.837247
Target:  5'- aGCUGCcacccuUCUGCGcggcgucGACUUCgaGGCCCCg -3'
miRNA:   3'- -CGAUGu-----AGAUGC-------UUGAGGggCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 35376 0.68 0.835507
Target:  5'- cGCUGCGUCcaagccaccgguggcCGGAUUCCUCGACgggcaCCCa -3'
miRNA:   3'- -CGAUGUAGau-------------GCUUGAGGGGCUG-----GGG- -5'
18483 3' -52.9 NC_004681.1 + 63417 0.68 0.829354
Target:  5'- aCUGCGguccUGAAUUCCCUGGCCaCCa -3'
miRNA:   3'- cGAUGUagauGCUUGAGGGGCUGG-GG- -5'
18483 3' -52.9 NC_004681.1 + 31393 0.68 0.811243
Target:  5'- gGCUACGgggCgcgcgACGGACUgCCCGAuggugcagcUCCCu -3'
miRNA:   3'- -CGAUGUa--Ga----UGCUUGAgGGGCU---------GGGG- -5'
18483 3' -52.9 NC_004681.1 + 63145 0.67 0.863109
Target:  5'- gGgUGgGUCUGCGAcgACUCgCCCcuuCCCCc -3'
miRNA:   3'- -CgAUgUAGAUGCU--UGAG-GGGcu-GGGG- -5'
18483 3' -52.9 NC_004681.1 + 9925 0.67 0.863109
Target:  5'- uGCgGCcgCUGCGGACaaccuuggUCUCGACCUCg -3'
miRNA:   3'- -CGaUGuaGAUGCUUGa-------GGGGCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 56150 0.67 0.88602
Target:  5'- cGCcGCAUCaagGCGAugaaGCUCCgCGGCCa- -3'
miRNA:   3'- -CGaUGUAGa--UGCU----UGAGGgGCUGGgg -5'
18483 3' -52.9 NC_004681.1 + 31444 0.67 0.870987
Target:  5'- uGCgACAugaacUCUGCGGACggCCUGACCgCa -3'
miRNA:   3'- -CGaUGU-----AGAUGCUUGagGGGCUGGgG- -5'
18483 3' -52.9 NC_004681.1 + 49123 0.66 0.924996
Target:  5'- cGCUugGagUGCGAAUUCCgCGAUgCg -3'
miRNA:   3'- -CGAugUagAUGCUUGAGGgGCUGgGg -5'
18483 3' -52.9 NC_004681.1 + 37505 0.66 0.924996
Target:  5'- cGCggGCAUCa--GAGCacCCCCGACUUCu -3'
miRNA:   3'- -CGa-UGUAGaugCUUGa-GGGGCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 41246 0.66 0.9118
Target:  5'- uCUGCGUCgguccacuGCUCCUCauuuGACCCCa -3'
miRNA:   3'- cGAUGUAGaugcu---UGAGGGG----CUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 19558 0.66 0.906684
Target:  5'- aGCgGCAUCca-GcGCUUCCCGuuCCCCg -3'
miRNA:   3'- -CGaUGUAGaugCuUGAGGGGCu-GGGG- -5'
18483 3' -52.9 NC_004681.1 + 5489 0.66 0.906684
Target:  5'- cGCUggACAUCUACGGcgagACguaCCUGGCCauCCa -3'
miRNA:   3'- -CGA--UGUAGAUGCU----UGag-GGGCUGG--GG- -5'
18483 3' -52.9 NC_004681.1 + 55127 0.66 0.919157
Target:  5'- cGCUACGUCa--GAAgUUCCCCGGgCgCg -3'
miRNA:   3'- -CGAUGUAGaugCUU-GAGGGGCUgGgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.