Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 18483 | 3' | -52.9 | NC_004681.1 | + | 44823 | 0.66 | 0.900053 |
|
Target: 5'- --gACAUCgagACGGGCggcCCCCGugUCg -3' miRNA: 3'- cgaUGUAGa--UGCUUGa--GGGGCugGGg -5' |
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| 18483 | 3' | -52.9 | NC_004681.1 | + | 5489 | 0.66 | 0.906684 |
|
Target: 5'- cGCUggACAUCUACGGcgagACguaCCUGGCCauCCa -3' miRNA: 3'- -CGA--UGUAGAUGCU----UGag-GGGCUGG--GG- -5' |
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| 18483 | 3' | -52.9 | NC_004681.1 | + | 19558 | 0.66 | 0.906684 |
|
Target: 5'- aGCgGCAUCca-GcGCUUCCCGuuCCCCg -3' miRNA: 3'- -CGaUGUAGaugCuUGAGGGGCu-GGGG- -5' |
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| 18483 | 3' | -52.9 | NC_004681.1 | + | 41246 | 0.66 | 0.9118 |
|
Target: 5'- uCUGCGUCgguccacuGCUCCUCauuuGACCCCa -3' miRNA: 3'- cGAUGUAGaugcu---UGAGGGG----CUGGGG- -5' |
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| 18483 | 3' | -52.9 | NC_004681.1 | + | 49679 | 0.66 | 0.913052 |
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Target: 5'- gGCUAC---UGCGcGCUCUgCGGCCUCu -3' miRNA: 3'- -CGAUGuagAUGCuUGAGGgGCUGGGG- -5' |
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| 18483 | 3' | -52.9 | NC_004681.1 | + | 49123 | 0.66 | 0.924996 |
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Target: 5'- cGCUugGagUGCGAAUUCCgCGAUgCg -3' miRNA: 3'- -CGAugUagAUGCUUGAGGgGCUGgGg -5' |
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| 18483 | 3' | -52.9 | NC_004681.1 | + | 55127 | 0.66 | 0.919157 |
|
Target: 5'- cGCUACGUCa--GAAgUUCCCCGGgCgCg -3' miRNA: 3'- -CGAUGUAGaugCUU-GAGGGGCUgGgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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