miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18483 3' -52.9 NC_004681.1 + 50710 1.15 0.001214
Target:  5'- gGCUACAUCUACGAACUCCCCGACCCCg -3'
miRNA:   3'- -CGAUGUAGAUGCUUGAGGGGCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 21246 0.76 0.393534
Target:  5'- uCUGCAUCUcACGGccagccugugGCUCCCuggCGACCCCc -3'
miRNA:   3'- cGAUGUAGA-UGCU----------UGAGGG---GCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 66774 0.75 0.430187
Target:  5'- cCUACAUCgACGcugagcACUCCCUGgACCCCg -3'
miRNA:   3'- cGAUGUAGaUGCu-----UGAGGGGC-UGGGG- -5'
18483 3' -52.9 NC_004681.1 + 64303 0.75 0.44925
Target:  5'- gGCUACGacaaCcACGAAUUCCCCGACUUCc -3'
miRNA:   3'- -CGAUGUa---GaUGCUUGAGGGGCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 16282 0.73 0.571942
Target:  5'- gGC-GCAgggCUACcAGCUCCCCGAgggcauCCCCg -3'
miRNA:   3'- -CGaUGUa--GAUGcUUGAGGGGCU------GGGG- -5'
18483 3' -52.9 NC_004681.1 + 25745 0.73 0.571942
Target:  5'- --gGCAUCUccaccACGGGCgugCCgCUGACCCCg -3'
miRNA:   3'- cgaUGUAGA-----UGCUUGa--GG-GGCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 67303 0.73 0.571942
Target:  5'- --gGCAUCUcgcgugagguCGAACUCCUCGACCUg -3'
miRNA:   3'- cgaUGUAGAu---------GCUUGAGGGGCUGGGg -5'
18483 3' -52.9 NC_004681.1 + 24633 0.72 0.603044
Target:  5'- gGCUGCAUCccGCGAcaacaccGCggaCCCCGACaaCCCg -3'
miRNA:   3'- -CGAUGUAGa-UGCU-------UGa--GGGGCUG--GGG- -5'
18483 3' -52.9 NC_004681.1 + 39671 0.72 0.625704
Target:  5'- ---uCGUCcgaUGCGAGCUCCUCGGCCgCg -3'
miRNA:   3'- cgauGUAG---AUGCUUGAGGGGCUGGgG- -5'
18483 3' -52.9 NC_004681.1 + 62487 0.71 0.658094
Target:  5'- ----gGUCUACGAACUCCUgaucaUGGCCCa -3'
miRNA:   3'- cgaugUAGAUGCUUGAGGG-----GCUGGGg -5'
18483 3' -52.9 NC_004681.1 + 9119 0.71 0.679588
Target:  5'- gGCUcugGCGU-UGCGGGCUCguaCCCGACCgCCg -3'
miRNA:   3'- -CGA---UGUAgAUGCUUGAG---GGGCUGG-GG- -5'
18483 3' -52.9 NC_004681.1 + 10166 0.71 0.700908
Target:  5'- gGCcuCAUCUucgacACGAccggcCUCCCCGGCUCCg -3'
miRNA:   3'- -CGauGUAGA-----UGCUu----GAGGGGCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 61061 0.7 0.732377
Target:  5'- aGgUACAUCUcguCGGcacGCUgaCCgCCGACCCCg -3'
miRNA:   3'- -CgAUGUAGAu--GCU---UGA--GG-GGCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 32318 0.7 0.736513
Target:  5'- cGCUGCcgCUGCGAuggccuGCUCCaCCagguugccgaugaccGugCCCg -3'
miRNA:   3'- -CGAUGuaGAUGCU------UGAGG-GG---------------CugGGG- -5'
18483 3' -52.9 NC_004681.1 + 3508 0.7 0.742687
Target:  5'- cGC-ACGUCUuccucgccGgGAAgUCCCUGACUCCg -3'
miRNA:   3'- -CGaUGUAGA--------UgCUUgAGGGGCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 62112 0.7 0.75289
Target:  5'- uGCUGCAgUCgguggACGAGCgCaucaUCGGCCCCg -3'
miRNA:   3'- -CGAUGU-AGa----UGCUUGaGg---GGCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 26195 0.69 0.782744
Target:  5'- cGCUGgGUCUgACGGAaacgUCCUGGCCCg -3'
miRNA:   3'- -CGAUgUAGA-UGCUUga--GGGGCUGGGg -5'
18483 3' -52.9 NC_004681.1 + 45025 0.69 0.782744
Target:  5'- gGCUccACcgCguggggGCGAGCUCUuuGGCCUCu -3'
miRNA:   3'- -CGA--UGuaGa-----UGCUUGAGGggCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 54731 0.69 0.801911
Target:  5'- cGCUACGUCUccgACGAuga-CCaGGCCCCc -3'
miRNA:   3'- -CGAUGUAGA---UGCUugagGGgCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 40958 0.69 0.801911
Target:  5'- aGCaGCAUCUGC-AGCauggCCuuGACCUCg -3'
miRNA:   3'- -CGaUGUAGAUGcUUGa---GGggCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.