miRNA display CGI


Results 41 - 47 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18483 3' -52.9 NC_004681.1 + 41246 0.66 0.9118
Target:  5'- uCUGCGUCgguccacuGCUCCUCauuuGACCCCa -3'
miRNA:   3'- cGAUGUAGaugcu---UGAGGGG----CUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 49679 0.66 0.913052
Target:  5'- gGCUAC---UGCGcGCUCUgCGGCCUCu -3'
miRNA:   3'- -CGAUGuagAUGCuUGAGGgGCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 40331 0.66 0.919157
Target:  5'- uGCU-CGUCUauggcucccGCGcaaccgucaAGCUCCUccaCGACCCCa -3'
miRNA:   3'- -CGAuGUAGA---------UGC---------UUGAGGG---GCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 57824 0.66 0.919157
Target:  5'- aCUGCcUCUGCGGuGCUCUggUUGACCCa -3'
miRNA:   3'- cGAUGuAGAUGCU-UGAGG--GGCUGGGg -5'
18483 3' -52.9 NC_004681.1 + 55127 0.66 0.919157
Target:  5'- cGCUACGUCa--GAAgUUCCCCGGgCgCg -3'
miRNA:   3'- -CGAUGUAGaugCUU-GAGGGGCUgGgG- -5'
18483 3' -52.9 NC_004681.1 + 49123 0.66 0.924996
Target:  5'- cGCUugGagUGCGAAUUCCgCGAUgCg -3'
miRNA:   3'- -CGAugUagAUGCUUGAGGgGCUGgGg -5'
18483 3' -52.9 NC_004681.1 + 37505 0.66 0.924996
Target:  5'- cGCggGCAUCa--GAGCacCCCCGACUUCu -3'
miRNA:   3'- -CGa-UGUAGaugCUUGa-GGGGCUGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.