miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18483 3' -52.9 NC_004681.1 + 3508 0.7 0.742687
Target:  5'- cGC-ACGUCUuccucgccGgGAAgUCCCUGACUCCg -3'
miRNA:   3'- -CGaUGUAGA--------UgCUUgAGGGGCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 5489 0.66 0.906684
Target:  5'- cGCUggACAUCUACGGcgagACguaCCUGGCCauCCa -3'
miRNA:   3'- -CGA--UGUAGAUGCU----UGag-GGGCUGG--GG- -5'
18483 3' -52.9 NC_004681.1 + 7304 0.68 0.846665
Target:  5'- aGCUGCA-CgccaGCGAcguuccAC-CCCCGGCaCCCg -3'
miRNA:   3'- -CGAUGUaGa---UGCU------UGaGGGGCUG-GGG- -5'
18483 3' -52.9 NC_004681.1 + 7677 0.68 0.820394
Target:  5'- gGUgcCAUC-ACGGcCUCCCCGGCCguCCu -3'
miRNA:   3'- -CGauGUAGaUGCUuGAGGGGCUGG--GG- -5'
18483 3' -52.9 NC_004681.1 + 9119 0.71 0.679588
Target:  5'- gGCUcugGCGU-UGCGGGCUCguaCCCGACCgCCg -3'
miRNA:   3'- -CGA---UGUAgAUGCUUGAG---GGGCUGG-GG- -5'
18483 3' -52.9 NC_004681.1 + 9925 0.67 0.863109
Target:  5'- uGCgGCcgCUGCGGACaaccuuggUCUCGACCUCg -3'
miRNA:   3'- -CGaUGuaGAUGCUUGa-------GGGGCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 10166 0.71 0.700908
Target:  5'- gGCcuCAUCUucgacACGAccggcCUCCCCGGCUCCg -3'
miRNA:   3'- -CGauGUAGA-----UGCUu----GAGGGGCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 16282 0.73 0.571942
Target:  5'- gGC-GCAgggCUACcAGCUCCCCGAgggcauCCCCg -3'
miRNA:   3'- -CGaUGUa--GAUGcUUGAGGGGCU------GGGG- -5'
18483 3' -52.9 NC_004681.1 + 19558 0.66 0.906684
Target:  5'- aGCgGCAUCca-GcGCUUCCCGuuCCCCg -3'
miRNA:   3'- -CGaUGUAGaugCuUGAGGGGCu-GGGG- -5'
18483 3' -52.9 NC_004681.1 + 21246 0.76 0.393534
Target:  5'- uCUGCAUCUcACGGccagccugugGCUCCCuggCGACCCCc -3'
miRNA:   3'- cGAUGUAGA-UGCU----------UGAGGG---GCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 22307 0.66 0.900053
Target:  5'- aGUU-CGUgaUGCGAACuUCCCCGuCCCa -3'
miRNA:   3'- -CGAuGUAg-AUGCUUG-AGGGGCuGGGg -5'
18483 3' -52.9 NC_004681.1 + 23568 0.66 0.906684
Target:  5'- ---cCGUCUGCGAugaccuugGCggCgCCCGACCCa -3'
miRNA:   3'- cgauGUAGAUGCU--------UGa-G-GGGCUGGGg -5'
18483 3' -52.9 NC_004681.1 + 24633 0.72 0.603044
Target:  5'- gGCUGCAUCccGCGAcaacaccGCggaCCCCGACaaCCCg -3'
miRNA:   3'- -CGAUGUAGa-UGCU-------UGa--GGGGCUG--GGG- -5'
18483 3' -52.9 NC_004681.1 + 24918 0.68 0.837247
Target:  5'- aGCUGCcacccuUCUGCGcggcgucGACUUCgaGGCCCCg -3'
miRNA:   3'- -CGAUGu-----AGAUGC-------UUGAGGggCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 25745 0.73 0.571942
Target:  5'- --gGCAUCUccaccACGGGCgugCCgCUGACCCCg -3'
miRNA:   3'- cgaUGUAGA-----UGCUUGa--GG-GGCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 26195 0.69 0.782744
Target:  5'- cGCUGgGUCUgACGGAaacgUCCUGGCCCg -3'
miRNA:   3'- -CGAUgUAGA-UGCUUga--GGGGCUGGGg -5'
18483 3' -52.9 NC_004681.1 + 31393 0.68 0.811243
Target:  5'- gGCUACGgggCgcgcgACGGACUgCCCGAuggugcagcUCCCu -3'
miRNA:   3'- -CGAUGUa--Ga----UGCUUGAgGGGCU---------GGGG- -5'
18483 3' -52.9 NC_004681.1 + 31444 0.67 0.870987
Target:  5'- uGCgACAugaacUCUGCGGACggCCUGACCgCa -3'
miRNA:   3'- -CGaUGU-----AGAUGCUUGagGGGCUGGgG- -5'
18483 3' -52.9 NC_004681.1 + 32318 0.7 0.736513
Target:  5'- cGCUGCcgCUGCGAuggccuGCUCCaCCagguugccgaugaccGugCCCg -3'
miRNA:   3'- -CGAUGuaGAUGCU------UGAGG-GG---------------CugGGG- -5'
18483 3' -52.9 NC_004681.1 + 34127 0.68 0.855
Target:  5'- --cACAgauggACGAACUCCgCC-ACCCCg -3'
miRNA:   3'- cgaUGUaga--UGCUUGAGG-GGcUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.