Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18483 | 3' | -52.9 | NC_004681.1 | + | 40958 | 0.69 | 0.801911 |
Target: 5'- aGCaGCAUCUGC-AGCauggCCuuGACCUCg -3' miRNA: 3'- -CGaUGUAGAUGcUUGa---GGggCUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 40331 | 0.66 | 0.919157 |
Target: 5'- uGCU-CGUCUauggcucccGCGcaaccgucaAGCUCCUccaCGACCCCa -3' miRNA: 3'- -CGAuGUAGA---------UGC---------UUGAGGG---GCUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 39671 | 0.72 | 0.625704 |
Target: 5'- ---uCGUCcgaUGCGAGCUCCUCGGCCgCg -3' miRNA: 3'- cgauGUAG---AUGCUUGAGGGGCUGGgG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 39282 | 0.68 | 0.829354 |
Target: 5'- --gACGUCgaggGCGAGCaucUCCgCGGCCCg -3' miRNA: 3'- cgaUGUAGa---UGCUUG---AGGgGCUGGGg -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 37505 | 0.66 | 0.924996 |
Target: 5'- cGCggGCAUCa--GAGCacCCCCGACUUCu -3' miRNA: 3'- -CGa-UGUAGaugCUUGa-GGGGCUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 35423 | 0.66 | 0.906684 |
Target: 5'- aCUAC-UCgaaagACGGugAUUCCCaCGAUCCCg -3' miRNA: 3'- cGAUGuAGa----UGCU--UGAGGG-GCUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 35376 | 0.68 | 0.835507 |
Target: 5'- cGCUGCGUCcaagccaccgguggcCGGAUUCCUCGACgggcaCCCa -3' miRNA: 3'- -CGAUGUAGau-------------GCUUGAGGGGCUG-----GGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 34127 | 0.68 | 0.855 |
Target: 5'- --cACAgauggACGAACUCCgCC-ACCCCg -3' miRNA: 3'- cgaUGUaga--UGCUUGAGG-GGcUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 32318 | 0.7 | 0.736513 |
Target: 5'- cGCUGCcgCUGCGAuggccuGCUCCaCCagguugccgaugaccGugCCCg -3' miRNA: 3'- -CGAUGuaGAUGCU------UGAGG-GG---------------CugGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 31444 | 0.67 | 0.870987 |
Target: 5'- uGCgACAugaacUCUGCGGACggCCUGACCgCa -3' miRNA: 3'- -CGaUGU-----AGAUGCUUGagGGGCUGGgG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 31393 | 0.68 | 0.811243 |
Target: 5'- gGCUACGgggCgcgcgACGGACUgCCCGAuggugcagcUCCCu -3' miRNA: 3'- -CGAUGUa--Ga----UGCUUGAgGGGCU---------GGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 26195 | 0.69 | 0.782744 |
Target: 5'- cGCUGgGUCUgACGGAaacgUCCUGGCCCg -3' miRNA: 3'- -CGAUgUAGA-UGCUUga--GGGGCUGGGg -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 25745 | 0.73 | 0.571942 |
Target: 5'- --gGCAUCUccaccACGGGCgugCCgCUGACCCCg -3' miRNA: 3'- cgaUGUAGA-----UGCUUGa--GG-GGCUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 24918 | 0.68 | 0.837247 |
Target: 5'- aGCUGCcacccuUCUGCGcggcgucGACUUCgaGGCCCCg -3' miRNA: 3'- -CGAUGu-----AGAUGC-------UUGAGGggCUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 24633 | 0.72 | 0.603044 |
Target: 5'- gGCUGCAUCccGCGAcaacaccGCggaCCCCGACaaCCCg -3' miRNA: 3'- -CGAUGUAGa-UGCU-------UGa--GGGGCUG--GGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 23568 | 0.66 | 0.906684 |
Target: 5'- ---cCGUCUGCGAugaccuugGCggCgCCCGACCCa -3' miRNA: 3'- cgauGUAGAUGCU--------UGa-G-GGGCUGGGg -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 22307 | 0.66 | 0.900053 |
Target: 5'- aGUU-CGUgaUGCGAACuUCCCCGuCCCa -3' miRNA: 3'- -CGAuGUAg-AUGCUUG-AGGGGCuGGGg -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 21246 | 0.76 | 0.393534 |
Target: 5'- uCUGCAUCUcACGGccagccugugGCUCCCuggCGACCCCc -3' miRNA: 3'- cGAUGUAGA-UGCU----------UGAGGG---GCUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 19558 | 0.66 | 0.906684 |
Target: 5'- aGCgGCAUCca-GcGCUUCCCGuuCCCCg -3' miRNA: 3'- -CGaUGUAGaugCuUGAGGGGCu-GGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 16282 | 0.73 | 0.571942 |
Target: 5'- gGC-GCAgggCUACcAGCUCCCCGAgggcauCCCCg -3' miRNA: 3'- -CGaUGUa--GAUGcUUGAGGGGCU------GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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