Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 18483 | 3' | -52.9 | NC_004681.1 | + | 10166 | 0.71 | 0.700908 |
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Target: 5'- gGCcuCAUCUucgacACGAccggcCUCCCCGGCUCCg -3' miRNA: 3'- -CGauGUAGA-----UGCUu----GAGGGGCUGGGG- -5' |
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| 18483 | 3' | -52.9 | NC_004681.1 | + | 9925 | 0.67 | 0.863109 |
|
Target: 5'- uGCgGCcgCUGCGGACaaccuuggUCUCGACCUCg -3' miRNA: 3'- -CGaUGuaGAUGCUUGa-------GGGGCUGGGG- -5' |
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| 18483 | 3' | -52.9 | NC_004681.1 | + | 9119 | 0.71 | 0.679588 |
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Target: 5'- gGCUcugGCGU-UGCGGGCUCguaCCCGACCgCCg -3' miRNA: 3'- -CGA---UGUAgAUGCUUGAG---GGGCUGG-GG- -5' |
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| 18483 | 3' | -52.9 | NC_004681.1 | + | 7677 | 0.68 | 0.820394 |
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Target: 5'- gGUgcCAUC-ACGGcCUCCCCGGCCguCCu -3' miRNA: 3'- -CGauGUAGaUGCUuGAGGGGCUGG--GG- -5' |
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| 18483 | 3' | -52.9 | NC_004681.1 | + | 7304 | 0.68 | 0.846665 |
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Target: 5'- aGCUGCA-CgccaGCGAcguuccAC-CCCCGGCaCCCg -3' miRNA: 3'- -CGAUGUaGa---UGCU------UGaGGGGCUG-GGG- -5' |
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| 18483 | 3' | -52.9 | NC_004681.1 | + | 5489 | 0.66 | 0.906684 |
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Target: 5'- cGCUggACAUCUACGGcgagACguaCCUGGCCauCCa -3' miRNA: 3'- -CGA--UGUAGAUGCU----UGag-GGGCUGG--GG- -5' |
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| 18483 | 3' | -52.9 | NC_004681.1 | + | 3508 | 0.7 | 0.742687 |
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Target: 5'- cGC-ACGUCUuccucgccGgGAAgUCCCUGACUCCg -3' miRNA: 3'- -CGaUGUAGA--------UgCUUgAGGGGCUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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