Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18483 | 3' | -52.9 | NC_004681.1 | + | 35376 | 0.68 | 0.835507 |
Target: 5'- cGCUGCGUCcaagccaccgguggcCGGAUUCCUCGACgggcaCCCa -3' miRNA: 3'- -CGAUGUAGau-------------GCUUGAGGGGCUG-----GGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 63417 | 0.68 | 0.829354 |
Target: 5'- aCUGCGguccUGAAUUCCCUGGCCaCCa -3' miRNA: 3'- cGAUGUagauGCUUGAGGGGCUGG-GG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 31393 | 0.68 | 0.811243 |
Target: 5'- gGCUACGgggCgcgcgACGGACUgCCCGAuggugcagcUCCCu -3' miRNA: 3'- -CGAUGUa--Ga----UGCUUGAgGGGCU---------GGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 54731 | 0.69 | 0.801911 |
Target: 5'- cGCUACGUCUccgACGAuga-CCaGGCCCCc -3' miRNA: 3'- -CGAUGUAGA---UGCUugagGGgCUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 40958 | 0.69 | 0.801911 |
Target: 5'- aGCaGCAUCUGC-AGCauggCCuuGACCUCg -3' miRNA: 3'- -CGaUGUAGAUGcUUGa---GGggCUGGGG- -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 26195 | 0.69 | 0.782744 |
Target: 5'- cGCUGgGUCUgACGGAaacgUCCUGGCCCg -3' miRNA: 3'- -CGAUgUAGA-UGCUUga--GGGGCUGGGg -5' |
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18483 | 3' | -52.9 | NC_004681.1 | + | 50710 | 1.15 | 0.001214 |
Target: 5'- gGCUACAUCUACGAACUCCCCGACCCCg -3' miRNA: 3'- -CGAUGUAGAUGCUUGAGGGGCUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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