miRNA display CGI


Results 41 - 47 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18483 3' -52.9 NC_004681.1 + 35376 0.68 0.835507
Target:  5'- cGCUGCGUCcaagccaccgguggcCGGAUUCCUCGACgggcaCCCa -3'
miRNA:   3'- -CGAUGUAGau-------------GCUUGAGGGGCUG-----GGG- -5'
18483 3' -52.9 NC_004681.1 + 63417 0.68 0.829354
Target:  5'- aCUGCGguccUGAAUUCCCUGGCCaCCa -3'
miRNA:   3'- cGAUGUagauGCUUGAGGGGCUGG-GG- -5'
18483 3' -52.9 NC_004681.1 + 31393 0.68 0.811243
Target:  5'- gGCUACGgggCgcgcgACGGACUgCCCGAuggugcagcUCCCu -3'
miRNA:   3'- -CGAUGUa--Ga----UGCUUGAgGGGCU---------GGGG- -5'
18483 3' -52.9 NC_004681.1 + 54731 0.69 0.801911
Target:  5'- cGCUACGUCUccgACGAuga-CCaGGCCCCc -3'
miRNA:   3'- -CGAUGUAGA---UGCUugagGGgCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 40958 0.69 0.801911
Target:  5'- aGCaGCAUCUGC-AGCauggCCuuGACCUCg -3'
miRNA:   3'- -CGaUGUAGAUGcUUGa---GGggCUGGGG- -5'
18483 3' -52.9 NC_004681.1 + 26195 0.69 0.782744
Target:  5'- cGCUGgGUCUgACGGAaacgUCCUGGCCCg -3'
miRNA:   3'- -CGAUgUAGA-UGCUUga--GGGGCUGGGg -5'
18483 3' -52.9 NC_004681.1 + 50710 1.15 0.001214
Target:  5'- gGCUACAUCUACGAACUCCCCGACCCCg -3'
miRNA:   3'- -CGAUGUAGAUGCUUGAGGGGCUGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.