miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18484 3' -56.3 NC_004681.1 + 10013 0.66 0.775118
Target:  5'- cGCAUCuUCGGggaAgGCGUcGGCCAGc -3'
miRNA:   3'- -CGUAGcAGCCag-UgCGCGaCCGGUUc -5'
18484 3' -56.3 NC_004681.1 + 41756 0.66 0.764341
Target:  5'- cGCGcUGaacaUGGUCACguaguagGCGUUGGCCAGGa -3'
miRNA:   3'- -CGUaGCa---GCCAGUG-------CGCGACCGGUUC- -5'
18484 3' -56.3 NC_004681.1 + 58074 0.66 0.755407
Target:  5'- gGCG-CGU-GGaaGCGCGCUgcaacGGCCAAGa -3'
miRNA:   3'- -CGUaGCAgCCagUGCGCGA-----CCGGUUC- -5'
18484 3' -56.3 NC_004681.1 + 54946 0.66 0.74537
Target:  5'- gGCGUCaGcCGGUCGCaugaugaGCUGGUCGAa -3'
miRNA:   3'- -CGUAG-CaGCCAGUGcg-----CGACCGGUUc -5'
18484 3' -56.3 NC_004681.1 + 47478 0.66 0.724984
Target:  5'- cGCGUCG-CcGUgGCGCGUUGGCgGGc -3'
miRNA:   3'- -CGUAGCaGcCAgUGCGCGACCGgUUc -5'
18484 3' -56.3 NC_004681.1 + 574 0.67 0.718796
Target:  5'- aGCAUC-UCGGcCAgGCGCcuccccacgaacucGGCCAGGu -3'
miRNA:   3'- -CGUAGcAGCCaGUgCGCGa-------------CCGGUUC- -5'
18484 3' -56.3 NC_004681.1 + 7703 0.67 0.714655
Target:  5'- cCAUCGUCGGcgaagUCGCGgGCguagGuGCCAu- -3'
miRNA:   3'- cGUAGCAGCC-----AGUGCgCGa---C-CGGUuc -5'
18484 3' -56.3 NC_004681.1 + 471 0.68 0.662069
Target:  5'- --uUCGUgGGgagGCGC-CUGGCCGAGa -3'
miRNA:   3'- cguAGCAgCCag-UGCGcGACCGGUUC- -5'
18484 3' -56.3 NC_004681.1 + 39507 0.68 0.630125
Target:  5'- cGCAUCGUCGGcUC-UGCGCU--UCAGGg -3'
miRNA:   3'- -CGUAGCAGCC-AGuGCGCGAccGGUUC- -5'
18484 3' -56.3 NC_004681.1 + 24841 0.68 0.630124
Target:  5'- gGCGUCGgCGG-CGCGgGCggcGGCCGc- -3'
miRNA:   3'- -CGUAGCaGCCaGUGCgCGa--CCGGUuc -5'
18484 3' -56.3 NC_004681.1 + 6188 0.68 0.608821
Target:  5'- gGUGUCG-CGGUagaaCGCGCGCaucUGcGCCGAGa -3'
miRNA:   3'- -CGUAGCaGCCA----GUGCGCG---AC-CGGUUC- -5'
18484 3' -56.3 NC_004681.1 + 69353 0.69 0.595009
Target:  5'- cCAUCagguGUCGGacagacccagccgaUgACGCGCUGGCCAc- -3'
miRNA:   3'- cGUAG----CAGCC--------------AgUGCGCGACCGGUuc -5'
18484 3' -56.3 NC_004681.1 + 9092 0.7 0.524977
Target:  5'- cGCGUCGUcacCGG-CGC-CGCUGGCuCGGGc -3'
miRNA:   3'- -CGUAGCA---GCCaGUGcGCGACCG-GUUC- -5'
18484 3' -56.3 NC_004681.1 + 24071 0.73 0.382449
Target:  5'- cCAUUGUCGGUgGCGcCGUgGGCCAGc -3'
miRNA:   3'- cGUAGCAGCCAgUGC-GCGaCCGGUUc -5'
18484 3' -56.3 NC_004681.1 + 50933 1.1 0.001097
Target:  5'- uGCAUCGUCGGUCACGCGCUGGCCAAGu -3'
miRNA:   3'- -CGUAGCAGCCAGUGCGCGACCGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.