miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18484 5' -55.4 NC_004681.1 + 58660 0.66 0.780949
Target:  5'- cCGCCUGCGCCGcGgGCCAcaccugccugauGGCGg---- -3'
miRNA:   3'- -GUGGAUGCGGC-UgCGGU------------UCGCaguua -5'
18484 5' -55.4 NC_004681.1 + 3070 0.66 0.777997
Target:  5'- -uCCUGCGCaagaugggaguccuCGGCGCCAAGCacGUCc-- -3'
miRNA:   3'- guGGAUGCG--------------GCUGCGGUUCG--CAGuua -5'
18484 5' -55.4 NC_004681.1 + 15901 0.66 0.771058
Target:  5'- uCACCgugaagauCGCCGugGCCGcG-GUCAAg -3'
miRNA:   3'- -GUGGau------GCGGCugCGGUuCgCAGUUa -5'
18484 5' -55.4 NC_004681.1 + 56224 0.66 0.771058
Target:  5'- gACCgGCGUCGAC-CCGAGCGagcugCAAg -3'
miRNA:   3'- gUGGaUGCGGCUGcGGUUCGCa----GUUa -5'
18484 5' -55.4 NC_004681.1 + 28143 0.66 0.771058
Target:  5'- cCGCCUcgacCGCCaGCGCCAGcGcCGUCGGUc -3'
miRNA:   3'- -GUGGAu---GCGGcUGCGGUU-C-GCAGUUA- -5'
18484 5' -55.4 NC_004681.1 + 66771 0.66 0.761028
Target:  5'- cCGCCUACaUCGACGCUGAGCa----- -3'
miRNA:   3'- -GUGGAUGcGGCUGCGGUUCGcaguua -5'
18484 5' -55.4 NC_004681.1 + 30246 0.66 0.761028
Target:  5'- cCGCCacaGCGgCGGCgGCCGguacGGCGUCGAg -3'
miRNA:   3'- -GUGGa--UGCgGCUG-CGGU----UCGCAGUUa -5'
18484 5' -55.4 NC_004681.1 + 15941 0.66 0.760017
Target:  5'- gGCCauCGCUGGCGCCAucucguucauuggGGUGUCGc- -3'
miRNA:   3'- gUGGauGCGGCUGCGGU-------------UCGCAGUua -5'
18484 5' -55.4 NC_004681.1 + 15670 0.66 0.750868
Target:  5'- aCGCCaACGgCGACGUCGAGCacgccucggagGUCAu- -3'
miRNA:   3'- -GUGGaUGCgGCUGCGGUUCG-----------CAGUua -5'
18484 5' -55.4 NC_004681.1 + 46761 0.66 0.750868
Target:  5'- gACCgGCGCUGcGCGCgCAcGGCGUCAc- -3'
miRNA:   3'- gUGGaUGCGGC-UGCG-GU-UCGCAGUua -5'
18484 5' -55.4 NC_004681.1 + 32128 0.66 0.737487
Target:  5'- uCACCgcgGCgGCCcACGCCAAcgaccagcuggaccGCGUCAAg -3'
miRNA:   3'- -GUGGa--UG-CGGcUGCGGUU--------------CGCAGUUa -5'
18484 5' -55.4 NC_004681.1 + 15213 0.67 0.730208
Target:  5'- gACCccaACGUCGGCccGCUggGCGUCAu- -3'
miRNA:   3'- gUGGa--UGCGGCUG--CGGuuCGCAGUua -5'
18484 5' -55.4 NC_004681.1 + 50997 0.67 0.718677
Target:  5'- aCACCgGCGUCGACGucggggagcucuuCCAcaagGGCGUCAu- -3'
miRNA:   3'- -GUGGaUGCGGCUGC-------------GGU----UCGCAGUua -5'
18484 5' -55.4 NC_004681.1 + 7416 0.67 0.716569
Target:  5'- aGCCUuCGUCGuuGCCAagucgauuucaggcAGCGUCGAg -3'
miRNA:   3'- gUGGAuGCGGCugCGGU--------------UCGCAGUUa -5'
18484 5' -55.4 NC_004681.1 + 14436 0.67 0.709166
Target:  5'- aAUCUACGCCGccCGCgAGGCGgaggCGAa -3'
miRNA:   3'- gUGGAUGCGGCu-GCGgUUCGCa---GUUa -5'
18484 5' -55.4 NC_004681.1 + 27859 0.67 0.698529
Target:  5'- cCGCCgcugcCGCCGcUGCCGcGCGUCAc- -3'
miRNA:   3'- -GUGGau---GCGGCuGCGGUuCGCAGUua -5'
18484 5' -55.4 NC_004681.1 + 28036 0.67 0.698529
Target:  5'- gACCgacgGCGCUGGCGCU-GGCgGUCGAg -3'
miRNA:   3'- gUGGa---UGCGGCUGCGGuUCG-CAGUUa -5'
18484 5' -55.4 NC_004681.1 + 62674 0.68 0.677078
Target:  5'- gCACCUACuGCUGACGau--GCGUCGu- -3'
miRNA:   3'- -GUGGAUG-CGGCUGCgguuCGCAGUua -5'
18484 5' -55.4 NC_004681.1 + 45111 0.68 0.666285
Target:  5'- gACCgGgGCCGACGCCGucGCG-CAGg -3'
miRNA:   3'- gUGGaUgCGGCUGCGGUu-CGCaGUUa -5'
18484 5' -55.4 NC_004681.1 + 24935 0.68 0.655461
Target:  5'- cCGCCcgcgcCGCCGACGCCGAuGagGUCGAc -3'
miRNA:   3'- -GUGGau---GCGGCUGCGGUU-Cg-CAGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.