miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18485 3' -54.8 NC_004681.1 + 46305 0.66 0.792027
Target:  5'- ----cGGGCAGCCAUCCUgcaucguGGGCCa- -3'
miRNA:   3'- acuuaCUCGUUGGUGGGGu------CCUGGau -5'
18485 3' -54.8 NC_004681.1 + 23780 0.66 0.782187
Target:  5'- gUGAccGAGgaAGCCACCgCAGGcACCUu -3'
miRNA:   3'- -ACUuaCUCg-UUGGUGGgGUCC-UGGAu -5'
18485 3' -54.8 NC_004681.1 + 18294 0.66 0.772191
Target:  5'- gGggUGcgccGGgAGgCGCUCCAGGACCg- -3'
miRNA:   3'- aCuuAC----UCgUUgGUGGGGUCCUGGau -5'
18485 3' -54.8 NC_004681.1 + 12308 0.66 0.762051
Target:  5'- cGGAUGAgGUGACCaucguGCUCCAGGAgCCg- -3'
miRNA:   3'- aCUUACU-CGUUGG-----UGGGGUCCU-GGau -5'
18485 3' -54.8 NC_004681.1 + 21217 0.66 0.762051
Target:  5'- cUGGcgGAGCAG--ACCCUaaAGGACCUc -3'
miRNA:   3'- -ACUuaCUCGUUggUGGGG--UCCUGGAu -5'
18485 3' -54.8 NC_004681.1 + 20213 0.67 0.741384
Target:  5'- ----aGAGCAACagcucucggCAUUCCAGGACCUc -3'
miRNA:   3'- acuuaCUCGUUG---------GUGGGGUCCUGGAu -5'
18485 3' -54.8 NC_004681.1 + 32991 0.67 0.720277
Target:  5'- aGggUGu-CAGCUACCCCGGuagcGGCCUGc -3'
miRNA:   3'- aCuuACucGUUGGUGGGGUC----CUGGAU- -5'
18485 3' -54.8 NC_004681.1 + 25457 0.67 0.719211
Target:  5'- cUGAAcGAGCAGCCcauCCCCAucgcagaaacgugGGACUg- -3'
miRNA:   3'- -ACUUaCUCGUUGGu--GGGGU-------------CCUGGau -5'
18485 3' -54.8 NC_004681.1 + 31259 0.67 0.709587
Target:  5'- cGAAUcuGC--CCGCCCCAGGACUc- -3'
miRNA:   3'- aCUUAcuCGuuGGUGGGGUCCUGGau -5'
18485 3' -54.8 NC_004681.1 + 46843 0.67 0.709587
Target:  5'- -----cGGCAACCGCCCCGGcACCc- -3'
miRNA:   3'- acuuacUCGUUGGUGGGGUCcUGGau -5'
18485 3' -54.8 NC_004681.1 + 57209 0.67 0.708513
Target:  5'- ----gGGGCGgaucGCCGCCCCAGGAagucacuCCUu -3'
miRNA:   3'- acuuaCUCGU----UGGUGGGGUCCU-------GGAu -5'
18485 3' -54.8 NC_004681.1 + 22762 0.67 0.698821
Target:  5'- cGAGUGucGCAuugACgACCCCaccacGGGGCCUGu -3'
miRNA:   3'- aCUUACu-CGU---UGgUGGGG-----UCCUGGAU- -5'
18485 3' -54.8 NC_004681.1 + 4592 0.68 0.677106
Target:  5'- cGAAgucGAGCAcAUCGCCCuCAGuGACCUu -3'
miRNA:   3'- aCUUa--CUCGU-UGGUGGG-GUC-CUGGAu -5'
18485 3' -54.8 NC_004681.1 + 18686 0.68 0.655221
Target:  5'- ----cGGGCAGCCGCCU--GGACCUc -3'
miRNA:   3'- acuuaCUCGUUGGUGGGguCCUGGAu -5'
18485 3' -54.8 NC_004681.1 + 50400 0.68 0.655221
Target:  5'- cGAcuacGGCGACUgguacuggaACCCCAGGACCa- -3'
miRNA:   3'- aCUuac-UCGUUGG---------UGGGGUCCUGGau -5'
18485 3' -54.8 NC_004681.1 + 63805 0.68 0.644242
Target:  5'- ----aGAGCAGCCuuGCCCCuugcGGGCUUGg -3'
miRNA:   3'- acuuaCUCGUUGG--UGGGGu---CCUGGAU- -5'
18485 3' -54.8 NC_004681.1 + 39122 0.7 0.567615
Target:  5'- uUGggUGGGCGcACCACCagCAGG-CCg- -3'
miRNA:   3'- -ACuuACUCGU-UGGUGGg-GUCCuGGau -5'
18485 3' -54.8 NC_004681.1 + 27207 0.7 0.556809
Target:  5'- cGGAUGAGCuuGCCuCCaCCGGGugCg- -3'
miRNA:   3'- aCUUACUCGu-UGGuGG-GGUCCugGau -5'
18485 3' -54.8 NC_004681.1 + 23466 0.7 0.556809
Target:  5'- gUGGAggcGGGCAggagguugACCACCUCGGGcGCCUGa -3'
miRNA:   3'- -ACUUa--CUCGU--------UGGUGGGGUCC-UGGAU- -5'
18485 3' -54.8 NC_004681.1 + 73123 0.7 0.535385
Target:  5'- aGGAUGAGUu-CUACUCCGGGGCgUAc -3'
miRNA:   3'- aCUUACUCGuuGGUGGGGUCCUGgAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.