miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18485 5' -57.1 NC_004681.1 + 5509 0.66 0.688402
Target:  5'- -cCAGCAGUUUcgcguagcCGGUGUCAUGCUccUCg -3'
miRNA:   3'- caGUCGUCAGGa-------GCCGCGGUACGA--AG- -5'
18485 5' -57.1 NC_004681.1 + 42334 0.66 0.688402
Target:  5'- -cCAGCAG--CUCGGCGgCCGUGUg-- -3'
miRNA:   3'- caGUCGUCagGAGCCGC-GGUACGaag -5'
18485 5' -57.1 NC_004681.1 + 56485 0.66 0.666955
Target:  5'- cGUCGGCAacGUCC-CGGUGCUAcGCc-- -3'
miRNA:   3'- -CAGUCGU--CAGGaGCCGCGGUaCGaag -5'
18485 5' -57.1 NC_004681.1 + 54958 0.66 0.656179
Target:  5'- -gCGGUcGUCCUUGGCGUCA-GCcggUCg -3'
miRNA:   3'- caGUCGuCAGGAGCCGCGGUaCGa--AG- -5'
18485 5' -57.1 NC_004681.1 + 36808 0.67 0.602169
Target:  5'- --aGGCAGUCCUCuuuGuCGCCGcgggccguggcUGCUUCg -3'
miRNA:   3'- cagUCGUCAGGAGc--C-GCGGU-----------ACGAAG- -5'
18485 5' -57.1 NC_004681.1 + 39436 0.67 0.591405
Target:  5'- -aCAGCGGccCCUCGGaGCCGUGUc-- -3'
miRNA:   3'- caGUCGUCa-GGAGCCgCGGUACGaag -5'
18485 5' -57.1 NC_004681.1 + 7264 0.68 0.548762
Target:  5'- -gCGGCcGUCCaccUCGGCGCCgaGUGCg-- -3'
miRNA:   3'- caGUCGuCAGG---AGCCGCGG--UACGaag -5'
18485 5' -57.1 NC_004681.1 + 49881 0.69 0.507125
Target:  5'- --uGGCAGcCCUUGGUGCCGUGg--- -3'
miRNA:   3'- cagUCGUCaGGAGCCGCGGUACgaag -5'
18485 5' -57.1 NC_004681.1 + 46706 0.69 0.507125
Target:  5'- --gGGCggGGUCCUCGGCgaguggGCCGgucuggGCUUCg -3'
miRNA:   3'- cagUCG--UCAGGAGCCG------CGGUa-----CGAAG- -5'
18485 5' -57.1 NC_004681.1 + 63710 0.69 0.466891
Target:  5'- uGUCGguGCGGUCCUCGuuGagGUGCUUCa -3'
miRNA:   3'- -CAGU--CGUCAGGAGCcgCggUACGAAG- -5'
18485 5' -57.1 NC_004681.1 + 68518 0.7 0.428368
Target:  5'- -gCGGCAcgCCUgGGCGCCAUGCc-- -3'
miRNA:   3'- caGUCGUcaGGAgCCGCGGUACGaag -5'
18485 5' -57.1 NC_004681.1 + 39348 0.7 0.400741
Target:  5'- -gCGGCGGcCCUUGGCGCCcuUGCcgCg -3'
miRNA:   3'- caGUCGUCaGGAGCCGCGGu-ACGaaG- -5'
18485 5' -57.1 NC_004681.1 + 49503 0.73 0.302238
Target:  5'- aGUCGGCcuugacuucGUCCUCGGUGaCCucuggGUGCUUCa -3'
miRNA:   3'- -CAGUCGu--------CAGGAGCCGC-GG-----UACGAAG- -5'
18485 5' -57.1 NC_004681.1 + 3082 0.75 0.217762
Target:  5'- --uGGgAGUCCUCGGCGCCAaGCa-- -3'
miRNA:   3'- cagUCgUCAGGAGCCGCGGUaCGaag -5'
18485 5' -57.1 NC_004681.1 + 51178 1.09 0.000796
Target:  5'- aGUCAGCAGUCCUCGGCGCCAUGCUUCu -3'
miRNA:   3'- -CAGUCGUCAGGAGCCGCGGUACGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.