miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18486 3' -52.8 NC_004681.1 + 37159 0.66 0.921727
Target:  5'- gGCCGCUGggaugaGCCAcccCAUCACCGAc -3'
miRNA:   3'- -CGGUGGCaga---UGGUcuaGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 840 0.66 0.921727
Target:  5'- gGCCggguagGCCGUC-ACCAG-UCGUCcUCGAu -3'
miRNA:   3'- -CGG------UGGCAGaUGGUCuAGUAGuGGCU- -5'
18486 3' -52.8 NC_004681.1 + 11768 0.66 0.921727
Target:  5'- aGCCAuCCGgCUuccaguCgCGGAUCAgCACCGAg -3'
miRNA:   3'- -CGGU-GGCaGAu-----G-GUCUAGUaGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 49372 0.66 0.921727
Target:  5'- cGCaCACCuUCUGcgugaagcacCCAGAg-GUCACCGAg -3'
miRNA:   3'- -CG-GUGGcAGAU----------GGUCUagUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 13087 0.66 0.921727
Target:  5'- cGCCGCUGUCUAguaCAGcgCAUU-CCGu -3'
miRNA:   3'- -CGGUGGCAGAUg--GUCuaGUAGuGGCu -5'
18486 3' -52.8 NC_004681.1 + 9075 0.66 0.921727
Target:  5'- cGUCGCUGaaguaugGCCGcGUCGUCACCGGc -3'
miRNA:   3'- -CGGUGGCaga----UGGUcUAGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 56781 0.66 0.921727
Target:  5'- cCCACCuguacGUCUACCGGGUCGcccaCAUCa- -3'
miRNA:   3'- cGGUGG-----CAGAUGGUCUAGUa---GUGGcu -5'
18486 3' -52.8 NC_004681.1 + 6547 0.66 0.921727
Target:  5'- aGCCACCcc---CCAaggaGUCGUCACCGAa -3'
miRNA:   3'- -CGGUGGcagauGGUc---UAGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 16353 0.66 0.919945
Target:  5'- uCCACCGUgUACUcgcggugcuuguucGGGUCGUugggauuucCGCCGAa -3'
miRNA:   3'- cGGUGGCAgAUGG--------------UCUAGUA---------GUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 30563 0.66 0.915693
Target:  5'- aCCACCGagucCUACCGGcgCAagCGCCa- -3'
miRNA:   3'- cGGUGGCa---GAUGGUCuaGUa-GUGGcu -5'
18486 3' -52.8 NC_004681.1 + 13300 0.66 0.915693
Target:  5'- cGCC-CUGUCgaGCCuggAGAUCGagGCCGAc -3'
miRNA:   3'- -CGGuGGCAGa-UGG---UCUAGUagUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 38918 0.66 0.909391
Target:  5'- uGCCGCCGUaggcCCGGAUgGUC-UCGGc -3'
miRNA:   3'- -CGGUGGCAgau-GGUCUAgUAGuGGCU- -5'
18486 3' -52.8 NC_004681.1 + 6745 0.66 0.902822
Target:  5'- aGCCACCaUCgACCAG-UCG--GCCGAg -3'
miRNA:   3'- -CGGUGGcAGaUGGUCuAGUagUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 61769 0.66 0.902822
Target:  5'- gGCCGCCaUCgGCCAGGagcucuaCGUCGCCa- -3'
miRNA:   3'- -CGGUGGcAGaUGGUCUa------GUAGUGGcu -5'
18486 3' -52.8 NC_004681.1 + 47205 0.66 0.902822
Target:  5'- cGCCACCGaCaacccugGCCAGuccAUCcgCACCGc -3'
miRNA:   3'- -CGGUGGCaGa------UGGUC---UAGuaGUGGCu -5'
18486 3' -52.8 NC_004681.1 + 26310 0.66 0.902822
Target:  5'- cGCCGCCGUggcggGCCAGGaCGUUuCCGu -3'
miRNA:   3'- -CGGUGGCAga---UGGUCUaGUAGuGGCu -5'
18486 3' -52.8 NC_004681.1 + 47108 0.66 0.902151
Target:  5'- cGCCGCCG-CUgagcgacgagaacGCCgAGggCcgCGCCGAa -3'
miRNA:   3'- -CGGUGGCaGA-------------UGG-UCuaGuaGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 25260 0.66 0.89599
Target:  5'- gGCCACUGaaUACCuucuGGUCcgCGCCa- -3'
miRNA:   3'- -CGGUGGCagAUGGu---CUAGuaGUGGcu -5'
18486 3' -52.8 NC_004681.1 + 25296 0.66 0.89599
Target:  5'- cGCCGCCG-UUGCCAGcgCcgCcaggggccugACCGGg -3'
miRNA:   3'- -CGGUGGCaGAUGGUCuaGuaG----------UGGCU- -5'
18486 3' -52.8 NC_004681.1 + 54609 0.66 0.893184
Target:  5'- gGCCACCGauccugggaccagcUCUugGCCugcuugcGGAUCAccucuUCGCCGAc -3'
miRNA:   3'- -CGGUGGC--------------AGA--UGG-------UCUAGU-----AGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.