miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18486 3' -52.8 NC_004681.1 + 51272 1.11 0.001981
Target:  5'- cGCCACCGUCUACCAGAUCAUCACCGAc -3'
miRNA:   3'- -CGGUGGCAGAUGGUCUAGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 27852 0.82 0.186279
Target:  5'- uGCCGCCG-CUGCC-GcgCGUCACCGAa -3'
miRNA:   3'- -CGGUGGCaGAUGGuCuaGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 49884 0.78 0.303448
Target:  5'- cGCCACUGcUCUACCAGG-CAggcaagcacuacUCACCGAa -3'
miRNA:   3'- -CGGUGGC-AGAUGGUCUaGU------------AGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 3930 0.77 0.342462
Target:  5'- uGCCGCCGUCuUGCCAGGcaagaaucUCAUCAgCGc -3'
miRNA:   3'- -CGGUGGCAG-AUGGUCU--------AGUAGUgGCu -5'
18486 3' -52.8 NC_004681.1 + 9413 0.76 0.393879
Target:  5'- uGCCGCCGUUgACCGGGUugccguaggCGUUGCCGAa -3'
miRNA:   3'- -CGGUGGCAGaUGGUCUA---------GUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 59894 0.74 0.48983
Target:  5'- cGCCAgCGUCgacuCCA--UCGUCACCGAc -3'
miRNA:   3'- -CGGUgGCAGau--GGUcuAGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 11777 0.74 0.520718
Target:  5'- gGCCGCU-UCUACgAGAUCGgugccaUCACCGAg -3'
miRNA:   3'- -CGGUGGcAGAUGgUCUAGU------AGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 25089 0.72 0.595324
Target:  5'- uGCCGCCGacgcCUgugccGCCAGAgccccCGUCGCCGGg -3'
miRNA:   3'- -CGGUGGCa---GA-----UGGUCUa----GUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 33965 0.72 0.606167
Target:  5'- gGUC-CCGUCcgcgGCCaAGGUUGUCACCGAc -3'
miRNA:   3'- -CGGuGGCAGa---UGG-UCUAGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 39964 0.72 0.606167
Target:  5'- -gCGCgCGUCggcGCCGGGUCAacUCACCGGc -3'
miRNA:   3'- cgGUG-GCAGa--UGGUCUAGU--AGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 28223 0.71 0.660527
Target:  5'- cGCCGCCGUUgcccGCgGGGcCGUCGCUGGu -3'
miRNA:   3'- -CGGUGGCAGa---UGgUCUaGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 28274 0.71 0.682159
Target:  5'- cGCCACCGUC-ACCuGcGUCAgUGCCGGu -3'
miRNA:   3'- -CGGUGGCAGaUGGuC-UAGUaGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 65260 0.7 0.735234
Target:  5'- aGCCAUCGcCUGCCuuguGGUCGUC-CgCGAc -3'
miRNA:   3'- -CGGUGGCaGAUGGu---CUAGUAGuG-GCU- -5'
18486 3' -52.8 NC_004681.1 + 27717 0.7 0.735234
Target:  5'- cGCCGCCG-CcGCCAGcgC--CACCGAg -3'
miRNA:   3'- -CGGUGGCaGaUGGUCuaGuaGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 755 0.7 0.744559
Target:  5'- aGUCAgCGUCcaggucgACCGGAUCGgcgucgaUCACCGGg -3'
miRNA:   3'- -CGGUgGCAGa------UGGUCUAGU-------AGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 15712 0.7 0.744559
Target:  5'- uCCAUCGUCUuCgCGGucgucuuGUCGUCGCCGAa -3'
miRNA:   3'- cGGUGGCAGAuG-GUC-------UAGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 62543 0.7 0.744559
Target:  5'- -aCACCGUCUACCucGGuGUCAUCcaggagauggaacGCCGGg -3'
miRNA:   3'- cgGUGGCAGAUGG--UC-UAGUAG-------------UGGCU- -5'
18486 3' -52.8 NC_004681.1 + 46186 0.69 0.765952
Target:  5'- aCCACCGaaaUCggACagaAGAUCAUCACCa- -3'
miRNA:   3'- cGGUGGC---AGa-UGg--UCUAGUAGUGGcu -5'
18486 3' -52.8 NC_004681.1 + 60152 0.69 0.765952
Target:  5'- gGCCACgGUCagccggUGCCAGGUgCGggagcCGCCGAa -3'
miRNA:   3'- -CGGUGgCAG------AUGGUCUA-GUa----GUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 23137 0.69 0.775937
Target:  5'- aGCCAUCcUgaGCCAGGUCGUUGCCu- -3'
miRNA:   3'- -CGGUGGcAgaUGGUCUAGUAGUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.