miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18486 3' -52.8 NC_004681.1 + 34572 0.67 0.888897
Target:  5'- aCCACCG-CUGCuucgugccacggCAGGUCAUCGUCGGc -3'
miRNA:   3'- cGGUGGCaGAUG------------GUCUAGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 39577 0.67 0.888897
Target:  5'- uGCCACCGgcCUugaGCCAGcgCAcCGCgGAg -3'
miRNA:   3'- -CGGUGGCa-GA---UGGUCuaGUaGUGgCU- -5'
18486 3' -52.8 NC_004681.1 + 3564 0.67 0.881549
Target:  5'- uGCagACCGUCU-CCAcgguggggacGggCGUCACCGAa -3'
miRNA:   3'- -CGg-UGGCAGAuGGU----------CuaGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 30232 0.67 0.881549
Target:  5'- aGCCcgacccacagGCCGcCUugUAGAUCAU-GCCGGa -3'
miRNA:   3'- -CGG----------UGGCaGAugGUCUAGUAgUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 45618 0.67 0.866106
Target:  5'- aGCCGCCGUCgucGCCcuuguaguAGGg-GUCGCCGu -3'
miRNA:   3'- -CGGUGGCAGa--UGG--------UCUagUAGUGGCu -5'
18486 3' -52.8 NC_004681.1 + 49246 0.67 0.866106
Target:  5'- uGUCGCCG-CUGCCA--UCGUCACgCGc -3'
miRNA:   3'- -CGGUGGCaGAUGGUcuAGUAGUG-GCu -5'
18486 3' -52.8 NC_004681.1 + 23555 0.67 0.866106
Target:  5'- aCCACCGUCUcugGCaCAGuguUCGUCAgCCa- -3'
miRNA:   3'- cGGUGGCAGA---UG-GUCu--AGUAGU-GGcu -5'
18486 3' -52.8 NC_004681.1 + 53058 0.67 0.858024
Target:  5'- uGCCGCCaGcCUGCCAGGccaCGUCGgUGAc -3'
miRNA:   3'- -CGGUGG-CaGAUGGUCUa--GUAGUgGCU- -5'
18486 3' -52.8 NC_004681.1 + 10024 0.67 0.858024
Target:  5'- cGCCAUCGUggACCcguacugcGGGUCAUCGCUc- -3'
miRNA:   3'- -CGGUGGCAgaUGG--------UCUAGUAGUGGcu -5'
18486 3' -52.8 NC_004681.1 + 54890 0.67 0.849712
Target:  5'- aGCUGcCCGaCUACCAGGUCAagUACCa- -3'
miRNA:   3'- -CGGU-GGCaGAUGGUCUAGUa-GUGGcu -5'
18486 3' -52.8 NC_004681.1 + 16285 0.67 0.849712
Target:  5'- gGCCugC-UCUGCCAuGAagAUgGCCGAg -3'
miRNA:   3'- -CGGugGcAGAUGGU-CUagUAgUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 34863 0.68 0.841176
Target:  5'- cGCUACCGUCa---AGAUCAUCAauGAg -3'
miRNA:   3'- -CGGUGGCAGauggUCUAGUAGUggCU- -5'
18486 3' -52.8 NC_004681.1 + 15920 0.68 0.82347
Target:  5'- gGCCGCgGUCaagaccauCCAGGcCAUCGCUGGc -3'
miRNA:   3'- -CGGUGgCAGau------GGUCUaGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 28148 0.68 0.804978
Target:  5'- cGCCACCGcCUcgaccGCCAGcgCcagCGCCGu -3'
miRNA:   3'- -CGGUGGCaGA-----UGGUCuaGua-GUGGCu -5'
18486 3' -52.8 NC_004681.1 + 22290 0.68 0.804978
Target:  5'- uCC-CCGUCccagAUCAGGUCGUUGCCGu -3'
miRNA:   3'- cGGuGGCAGa---UGGUCUAGUAGUGGCu -5'
18486 3' -52.8 NC_004681.1 + 31976 0.69 0.785777
Target:  5'- --gAgCGUgaACCAGAUCAUCGCCa- -3'
miRNA:   3'- cggUgGCAgaUGGUCUAGUAGUGGcu -5'
18486 3' -52.8 NC_004681.1 + 54169 0.69 0.785777
Target:  5'- cGCCACCGUCaACaAGGcugUCGUCAUCa- -3'
miRNA:   3'- -CGGUGGCAGaUGgUCU---AGUAGUGGcu -5'
18486 3' -52.8 NC_004681.1 + 13042 0.69 0.785777
Target:  5'- cGCCGCCaUCgccaaGCUGGAagcucgCAUCGCCGAg -3'
miRNA:   3'- -CGGUGGcAGa----UGGUCUa-----GUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 23137 0.69 0.775937
Target:  5'- aGCCAUCcUgaGCCAGGUCGUUGCCu- -3'
miRNA:   3'- -CGGUGGcAgaUGGUCUAGUAGUGGcu -5'
18486 3' -52.8 NC_004681.1 + 46186 0.69 0.765952
Target:  5'- aCCACCGaaaUCggACagaAGAUCAUCACCa- -3'
miRNA:   3'- cGGUGGC---AGa-UGg--UCUAGUAGUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.