miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18486 3' -52.8 NC_004681.1 + 755 0.7 0.744559
Target:  5'- aGUCAgCGUCcaggucgACCGGAUCGgcgucgaUCACCGGg -3'
miRNA:   3'- -CGGUgGCAGa------UGGUCUAGU-------AGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 840 0.66 0.921727
Target:  5'- gGCCggguagGCCGUC-ACCAG-UCGUCcUCGAu -3'
miRNA:   3'- -CGG------UGGCAGaUGGUCuAGUAGuGGCU- -5'
18486 3' -52.8 NC_004681.1 + 3564 0.67 0.881549
Target:  5'- uGCagACCGUCU-CCAcgguggggacGggCGUCACCGAa -3'
miRNA:   3'- -CGg-UGGCAGAuGGU----------CuaGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 3930 0.77 0.342462
Target:  5'- uGCCGCCGUCuUGCCAGGcaagaaucUCAUCAgCGc -3'
miRNA:   3'- -CGGUGGCAG-AUGGUCU--------AGUAGUgGCu -5'
18486 3' -52.8 NC_004681.1 + 6547 0.66 0.921727
Target:  5'- aGCCACCcc---CCAaggaGUCGUCACCGAa -3'
miRNA:   3'- -CGGUGGcagauGGUc---UAGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 6745 0.66 0.902822
Target:  5'- aGCCACCaUCgACCAG-UCG--GCCGAg -3'
miRNA:   3'- -CGGUGGcAGaUGGUCuAGUagUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 9075 0.66 0.921727
Target:  5'- cGUCGCUGaaguaugGCCGcGUCGUCACCGGc -3'
miRNA:   3'- -CGGUGGCaga----UGGUcUAGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 9413 0.76 0.393879
Target:  5'- uGCCGCCGUUgACCGGGUugccguaggCGUUGCCGAa -3'
miRNA:   3'- -CGGUGGCAGaUGGUCUA---------GUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 10024 0.67 0.858024
Target:  5'- cGCCAUCGUggACCcguacugcGGGUCAUCGCUc- -3'
miRNA:   3'- -CGGUGGCAgaUGG--------UCUAGUAGUGGcu -5'
18486 3' -52.8 NC_004681.1 + 11768 0.66 0.921727
Target:  5'- aGCCAuCCGgCUuccaguCgCGGAUCAgCACCGAg -3'
miRNA:   3'- -CGGU-GGCaGAu-----G-GUCUAGUaGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 11777 0.74 0.520718
Target:  5'- gGCCGCU-UCUACgAGAUCGgugccaUCACCGAg -3'
miRNA:   3'- -CGGUGGcAGAUGgUCUAGU------AGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 13042 0.69 0.785777
Target:  5'- cGCCGCCaUCgccaaGCUGGAagcucgCAUCGCCGAg -3'
miRNA:   3'- -CGGUGGcAGa----UGGUCUa-----GUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 13087 0.66 0.921727
Target:  5'- cGCCGCUGUCUAguaCAGcgCAUU-CCGu -3'
miRNA:   3'- -CGGUGGCAGAUg--GUCuaGUAGuGGCu -5'
18486 3' -52.8 NC_004681.1 + 13300 0.66 0.915693
Target:  5'- cGCC-CUGUCgaGCCuggAGAUCGagGCCGAc -3'
miRNA:   3'- -CGGuGGCAGa-UGG---UCUAGUagUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 15712 0.7 0.744559
Target:  5'- uCCAUCGUCUuCgCGGucgucuuGUCGUCGCCGAa -3'
miRNA:   3'- cGGUGGCAGAuG-GUC-------UAGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 15920 0.68 0.82347
Target:  5'- gGCCGCgGUCaagaccauCCAGGcCAUCGCUGGc -3'
miRNA:   3'- -CGGUGgCAGau------GGUCUaGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 16285 0.67 0.849712
Target:  5'- gGCCugC-UCUGCCAuGAagAUgGCCGAg -3'
miRNA:   3'- -CGGugGcAGAUGGU-CUagUAgUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 16353 0.66 0.919945
Target:  5'- uCCACCGUgUACUcgcggugcuuguucGGGUCGUugggauuucCGCCGAa -3'
miRNA:   3'- cGGUGGCAgAUGG--------------UCUAGUA---------GUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 22290 0.68 0.804978
Target:  5'- uCC-CCGUCccagAUCAGGUCGUUGCCGu -3'
miRNA:   3'- cGGuGGCAGa---UGGUCUAGUAGUGGCu -5'
18486 3' -52.8 NC_004681.1 + 23137 0.69 0.775937
Target:  5'- aGCCAUCcUgaGCCAGGUCGUUGCCu- -3'
miRNA:   3'- -CGGUGGcAgaUGGUCUAGUAGUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.