Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18486 | 3' | -52.8 | NC_004681.1 | + | 45618 | 0.67 | 0.866106 |
Target: 5'- aGCCGCCGUCgucGCCcuuguaguAGGg-GUCGCCGu -3' miRNA: 3'- -CGGUGGCAGa--UGG--------UCUagUAGUGGCu -5' |
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18486 | 3' | -52.8 | NC_004681.1 | + | 46186 | 0.69 | 0.765952 |
Target: 5'- aCCACCGaaaUCggACagaAGAUCAUCACCa- -3' miRNA: 3'- cGGUGGC---AGa-UGg--UCUAGUAGUGGcu -5' |
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18486 | 3' | -52.8 | NC_004681.1 | + | 47108 | 0.66 | 0.902151 |
Target: 5'- cGCCGCCG-CUgagcgacgagaacGCCgAGggCcgCGCCGAa -3' miRNA: 3'- -CGGUGGCaGA-------------UGG-UCuaGuaGUGGCU- -5' |
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18486 | 3' | -52.8 | NC_004681.1 | + | 47205 | 0.66 | 0.902822 |
Target: 5'- cGCCACCGaCaacccugGCCAGuccAUCcgCACCGc -3' miRNA: 3'- -CGGUGGCaGa------UGGUC---UAGuaGUGGCu -5' |
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18486 | 3' | -52.8 | NC_004681.1 | + | 49246 | 0.67 | 0.866106 |
Target: 5'- uGUCGCCG-CUGCCA--UCGUCACgCGc -3' miRNA: 3'- -CGGUGGCaGAUGGUcuAGUAGUG-GCu -5' |
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18486 | 3' | -52.8 | NC_004681.1 | + | 49372 | 0.66 | 0.921727 |
Target: 5'- cGCaCACCuUCUGcgugaagcacCCAGAg-GUCACCGAg -3' miRNA: 3'- -CG-GUGGcAGAU----------GGUCUagUAGUGGCU- -5' |
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18486 | 3' | -52.8 | NC_004681.1 | + | 49884 | 0.78 | 0.303448 |
Target: 5'- cGCCACUGcUCUACCAGG-CAggcaagcacuacUCACCGAa -3' miRNA: 3'- -CGGUGGC-AGAUGGUCUaGU------------AGUGGCU- -5' |
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18486 | 3' | -52.8 | NC_004681.1 | + | 51272 | 1.11 | 0.001981 |
Target: 5'- cGCCACCGUCUACCAGAUCAUCACCGAc -3' miRNA: 3'- -CGGUGGCAGAUGGUCUAGUAGUGGCU- -5' |
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18486 | 3' | -52.8 | NC_004681.1 | + | 53058 | 0.67 | 0.858024 |
Target: 5'- uGCCGCCaGcCUGCCAGGccaCGUCGgUGAc -3' miRNA: 3'- -CGGUGG-CaGAUGGUCUa--GUAGUgGCU- -5' |
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18486 | 3' | -52.8 | NC_004681.1 | + | 54169 | 0.69 | 0.785777 |
Target: 5'- cGCCACCGUCaACaAGGcugUCGUCAUCa- -3' miRNA: 3'- -CGGUGGCAGaUGgUCU---AGUAGUGGcu -5' |
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18486 | 3' | -52.8 | NC_004681.1 | + | 54609 | 0.66 | 0.893184 |
Target: 5'- gGCCACCGauccugggaccagcUCUugGCCugcuugcGGAUCAccucuUCGCCGAc -3' miRNA: 3'- -CGGUGGC--------------AGA--UGG-------UCUAGU-----AGUGGCU- -5' |
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18486 | 3' | -52.8 | NC_004681.1 | + | 54890 | 0.67 | 0.849712 |
Target: 5'- aGCUGcCCGaCUACCAGGUCAagUACCa- -3' miRNA: 3'- -CGGU-GGCaGAUGGUCUAGUa-GUGGcu -5' |
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18486 | 3' | -52.8 | NC_004681.1 | + | 56781 | 0.66 | 0.921727 |
Target: 5'- cCCACCuguacGUCUACCGGGUCGcccaCAUCa- -3' miRNA: 3'- cGGUGG-----CAGAUGGUCUAGUa---GUGGcu -5' |
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18486 | 3' | -52.8 | NC_004681.1 | + | 59894 | 0.74 | 0.48983 |
Target: 5'- cGCCAgCGUCgacuCCA--UCGUCACCGAc -3' miRNA: 3'- -CGGUgGCAGau--GGUcuAGUAGUGGCU- -5' |
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18486 | 3' | -52.8 | NC_004681.1 | + | 60152 | 0.69 | 0.765952 |
Target: 5'- gGCCACgGUCagccggUGCCAGGUgCGggagcCGCCGAa -3' miRNA: 3'- -CGGUGgCAG------AUGGUCUA-GUa----GUGGCU- -5' |
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18486 | 3' | -52.8 | NC_004681.1 | + | 61769 | 0.66 | 0.902822 |
Target: 5'- gGCCGCCaUCgGCCAGGagcucuaCGUCGCCa- -3' miRNA: 3'- -CGGUGGcAGaUGGUCUa------GUAGUGGcu -5' |
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18486 | 3' | -52.8 | NC_004681.1 | + | 62543 | 0.7 | 0.744559 |
Target: 5'- -aCACCGUCUACCucGGuGUCAUCcaggagauggaacGCCGGg -3' miRNA: 3'- cgGUGGCAGAUGG--UC-UAGUAG-------------UGGCU- -5' |
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18486 | 3' | -52.8 | NC_004681.1 | + | 65260 | 0.7 | 0.735234 |
Target: 5'- aGCCAUCGcCUGCCuuguGGUCGUC-CgCGAc -3' miRNA: 3'- -CGGUGGCaGAUGGu---CUAGUAGuG-GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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