miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18486 3' -52.8 NC_004681.1 + 65260 0.7 0.735234
Target:  5'- aGCCAUCGcCUGCCuuguGGUCGUC-CgCGAc -3'
miRNA:   3'- -CGGUGGCaGAUGGu---CUAGUAGuG-GCU- -5'
18486 3' -52.8 NC_004681.1 + 62543 0.7 0.744559
Target:  5'- -aCACCGUCUACCucGGuGUCAUCcaggagauggaacGCCGGg -3'
miRNA:   3'- cgGUGGCAGAUGG--UC-UAGUAG-------------UGGCU- -5'
18486 3' -52.8 NC_004681.1 + 61769 0.66 0.902822
Target:  5'- gGCCGCCaUCgGCCAGGagcucuaCGUCGCCa- -3'
miRNA:   3'- -CGGUGGcAGaUGGUCUa------GUAGUGGcu -5'
18486 3' -52.8 NC_004681.1 + 60152 0.69 0.765952
Target:  5'- gGCCACgGUCagccggUGCCAGGUgCGggagcCGCCGAa -3'
miRNA:   3'- -CGGUGgCAG------AUGGUCUA-GUa----GUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 59894 0.74 0.48983
Target:  5'- cGCCAgCGUCgacuCCA--UCGUCACCGAc -3'
miRNA:   3'- -CGGUgGCAGau--GGUcuAGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 56781 0.66 0.921727
Target:  5'- cCCACCuguacGUCUACCGGGUCGcccaCAUCa- -3'
miRNA:   3'- cGGUGG-----CAGAUGGUCUAGUa---GUGGcu -5'
18486 3' -52.8 NC_004681.1 + 54890 0.67 0.849712
Target:  5'- aGCUGcCCGaCUACCAGGUCAagUACCa- -3'
miRNA:   3'- -CGGU-GGCaGAUGGUCUAGUa-GUGGcu -5'
18486 3' -52.8 NC_004681.1 + 54609 0.66 0.893184
Target:  5'- gGCCACCGauccugggaccagcUCUugGCCugcuugcGGAUCAccucuUCGCCGAc -3'
miRNA:   3'- -CGGUGGC--------------AGA--UGG-------UCUAGU-----AGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 54169 0.69 0.785777
Target:  5'- cGCCACCGUCaACaAGGcugUCGUCAUCa- -3'
miRNA:   3'- -CGGUGGCAGaUGgUCU---AGUAGUGGcu -5'
18486 3' -52.8 NC_004681.1 + 53058 0.67 0.858024
Target:  5'- uGCCGCCaGcCUGCCAGGccaCGUCGgUGAc -3'
miRNA:   3'- -CGGUGG-CaGAUGGUCUa--GUAGUgGCU- -5'
18486 3' -52.8 NC_004681.1 + 51272 1.11 0.001981
Target:  5'- cGCCACCGUCUACCAGAUCAUCACCGAc -3'
miRNA:   3'- -CGGUGGCAGAUGGUCUAGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 49884 0.78 0.303448
Target:  5'- cGCCACUGcUCUACCAGG-CAggcaagcacuacUCACCGAa -3'
miRNA:   3'- -CGGUGGC-AGAUGGUCUaGU------------AGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 49372 0.66 0.921727
Target:  5'- cGCaCACCuUCUGcgugaagcacCCAGAg-GUCACCGAg -3'
miRNA:   3'- -CG-GUGGcAGAU----------GGUCUagUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 49246 0.67 0.866106
Target:  5'- uGUCGCCG-CUGCCA--UCGUCACgCGc -3'
miRNA:   3'- -CGGUGGCaGAUGGUcuAGUAGUG-GCu -5'
18486 3' -52.8 NC_004681.1 + 47205 0.66 0.902822
Target:  5'- cGCCACCGaCaacccugGCCAGuccAUCcgCACCGc -3'
miRNA:   3'- -CGGUGGCaGa------UGGUC---UAGuaGUGGCu -5'
18486 3' -52.8 NC_004681.1 + 47108 0.66 0.902151
Target:  5'- cGCCGCCG-CUgagcgacgagaacGCCgAGggCcgCGCCGAa -3'
miRNA:   3'- -CGGUGGCaGA-------------UGG-UCuaGuaGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 46186 0.69 0.765952
Target:  5'- aCCACCGaaaUCggACagaAGAUCAUCACCa- -3'
miRNA:   3'- cGGUGGC---AGa-UGg--UCUAGUAGUGGcu -5'
18486 3' -52.8 NC_004681.1 + 45618 0.67 0.866106
Target:  5'- aGCCGCCGUCgucGCCcuuguaguAGGg-GUCGCCGu -3'
miRNA:   3'- -CGGUGGCAGa--UGG--------UCUagUAGUGGCu -5'
18486 3' -52.8 NC_004681.1 + 39964 0.72 0.606167
Target:  5'- -gCGCgCGUCggcGCCGGGUCAacUCACCGGc -3'
miRNA:   3'- cgGUG-GCAGa--UGGUCUAGU--AGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 39577 0.67 0.888897
Target:  5'- uGCCACCGgcCUugaGCCAGcgCAcCGCgGAg -3'
miRNA:   3'- -CGGUGGCa-GA---UGGUCuaGUaGUGgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.