miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18486 3' -52.8 NC_004681.1 + 38918 0.66 0.909391
Target:  5'- uGCCGCCGUaggcCCGGAUgGUC-UCGGc -3'
miRNA:   3'- -CGGUGGCAgau-GGUCUAgUAGuGGCU- -5'
18486 3' -52.8 NC_004681.1 + 37159 0.66 0.921727
Target:  5'- gGCCGCUGggaugaGCCAcccCAUCACCGAc -3'
miRNA:   3'- -CGGUGGCaga---UGGUcuaGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 34863 0.68 0.841176
Target:  5'- cGCUACCGUCa---AGAUCAUCAauGAg -3'
miRNA:   3'- -CGGUGGCAGauggUCUAGUAGUggCU- -5'
18486 3' -52.8 NC_004681.1 + 34572 0.67 0.888897
Target:  5'- aCCACCG-CUGCuucgugccacggCAGGUCAUCGUCGGc -3'
miRNA:   3'- cGGUGGCaGAUG------------GUCUAGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 33965 0.72 0.606167
Target:  5'- gGUC-CCGUCcgcgGCCaAGGUUGUCACCGAc -3'
miRNA:   3'- -CGGuGGCAGa---UGG-UCUAGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 31976 0.69 0.785777
Target:  5'- --gAgCGUgaACCAGAUCAUCGCCa- -3'
miRNA:   3'- cggUgGCAgaUGGUCUAGUAGUGGcu -5'
18486 3' -52.8 NC_004681.1 + 30563 0.66 0.915693
Target:  5'- aCCACCGagucCUACCGGcgCAagCGCCa- -3'
miRNA:   3'- cGGUGGCa---GAUGGUCuaGUa-GUGGcu -5'
18486 3' -52.8 NC_004681.1 + 30232 0.67 0.881549
Target:  5'- aGCCcgacccacagGCCGcCUugUAGAUCAU-GCCGGa -3'
miRNA:   3'- -CGG----------UGGCaGAugGUCUAGUAgUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 28274 0.71 0.682159
Target:  5'- cGCCACCGUC-ACCuGcGUCAgUGCCGGu -3'
miRNA:   3'- -CGGUGGCAGaUGGuC-UAGUaGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 28223 0.71 0.660527
Target:  5'- cGCCGCCGUUgcccGCgGGGcCGUCGCUGGu -3'
miRNA:   3'- -CGGUGGCAGa---UGgUCUaGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 28148 0.68 0.804978
Target:  5'- cGCCACCGcCUcgaccGCCAGcgCcagCGCCGu -3'
miRNA:   3'- -CGGUGGCaGA-----UGGUCuaGua-GUGGCu -5'
18486 3' -52.8 NC_004681.1 + 27852 0.82 0.186279
Target:  5'- uGCCGCCG-CUGCC-GcgCGUCACCGAa -3'
miRNA:   3'- -CGGUGGCaGAUGGuCuaGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 27717 0.7 0.735234
Target:  5'- cGCCGCCG-CcGCCAGcgC--CACCGAg -3'
miRNA:   3'- -CGGUGGCaGaUGGUCuaGuaGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 26310 0.66 0.902822
Target:  5'- cGCCGCCGUggcggGCCAGGaCGUUuCCGu -3'
miRNA:   3'- -CGGUGGCAga---UGGUCUaGUAGuGGCu -5'
18486 3' -52.8 NC_004681.1 + 25296 0.66 0.89599
Target:  5'- cGCCGCCG-UUGCCAGcgCcgCcaggggccugACCGGg -3'
miRNA:   3'- -CGGUGGCaGAUGGUCuaGuaG----------UGGCU- -5'
18486 3' -52.8 NC_004681.1 + 25260 0.66 0.89599
Target:  5'- gGCCACUGaaUACCuucuGGUCcgCGCCa- -3'
miRNA:   3'- -CGGUGGCagAUGGu---CUAGuaGUGGcu -5'
18486 3' -52.8 NC_004681.1 + 25089 0.72 0.595324
Target:  5'- uGCCGCCGacgcCUgugccGCCAGAgccccCGUCGCCGGg -3'
miRNA:   3'- -CGGUGGCa---GA-----UGGUCUa----GUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 23555 0.67 0.866106
Target:  5'- aCCACCGUCUcugGCaCAGuguUCGUCAgCCa- -3'
miRNA:   3'- cGGUGGCAGA---UG-GUCu--AGUAGU-GGcu -5'
18486 3' -52.8 NC_004681.1 + 23137 0.69 0.775937
Target:  5'- aGCCAUCcUgaGCCAGGUCGUUGCCu- -3'
miRNA:   3'- -CGGUGGcAgaUGGUCUAGUAGUGGcu -5'
18486 3' -52.8 NC_004681.1 + 22290 0.68 0.804978
Target:  5'- uCC-CCGUCccagAUCAGGUCGUUGCCGu -3'
miRNA:   3'- cGGuGGCAGa---UGGUCUAGUAGUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.