miRNA display CGI


Results 21 - 40 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18486 3' -52.8 NC_004681.1 + 39577 0.67 0.888897
Target:  5'- uGCCACCGgcCUugaGCCAGcgCAcCGCgGAg -3'
miRNA:   3'- -CGGUGGCa-GA---UGGUCuaGUaGUGgCU- -5'
18486 3' -52.8 NC_004681.1 + 45618 0.67 0.866106
Target:  5'- aGCCGCCGUCgucGCCcuuguaguAGGg-GUCGCCGu -3'
miRNA:   3'- -CGGUGGCAGa--UGG--------UCUagUAGUGGCu -5'
18486 3' -52.8 NC_004681.1 + 16353 0.66 0.919945
Target:  5'- uCCACCGUgUACUcgcggugcuuguucGGGUCGUugggauuucCGCCGAa -3'
miRNA:   3'- cGGUGGCAgAUGG--------------UCUAGUA---------GUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 25296 0.66 0.89599
Target:  5'- cGCCGCCG-UUGCCAGcgCcgCcaggggccugACCGGg -3'
miRNA:   3'- -CGGUGGCaGAUGGUCuaGuaG----------UGGCU- -5'
18486 3' -52.8 NC_004681.1 + 49246 0.67 0.866106
Target:  5'- uGUCGCCG-CUGCCA--UCGUCACgCGc -3'
miRNA:   3'- -CGGUGGCaGAUGGUcuAGUAGUG-GCu -5'
18486 3' -52.8 NC_004681.1 + 840 0.66 0.921727
Target:  5'- gGCCggguagGCCGUC-ACCAG-UCGUCcUCGAu -3'
miRNA:   3'- -CGG------UGGCAGaUGGUCuAGUAGuGGCU- -5'
18486 3' -52.8 NC_004681.1 + 53058 0.67 0.858024
Target:  5'- uGCCGCCaGcCUGCCAGGccaCGUCGgUGAc -3'
miRNA:   3'- -CGGUGG-CaGAUGGUCUa--GUAGUgGCU- -5'
18486 3' -52.8 NC_004681.1 + 16285 0.67 0.849712
Target:  5'- gGCCugC-UCUGCCAuGAagAUgGCCGAg -3'
miRNA:   3'- -CGGugGcAGAUGGU-CUagUAgUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 30232 0.67 0.881549
Target:  5'- aGCCcgacccacagGCCGcCUugUAGAUCAU-GCCGGa -3'
miRNA:   3'- -CGG----------UGGCaGAugGUCUAGUAgUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 49372 0.66 0.921727
Target:  5'- cGCaCACCuUCUGcgugaagcacCCAGAg-GUCACCGAg -3'
miRNA:   3'- -CG-GUGGcAGAU----------GGUCUagUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 34863 0.68 0.841176
Target:  5'- cGCUACCGUCa---AGAUCAUCAauGAg -3'
miRNA:   3'- -CGGUGGCAGauggUCUAGUAGUggCU- -5'
18486 3' -52.8 NC_004681.1 + 15920 0.68 0.82347
Target:  5'- gGCCGCgGUCaagaccauCCAGGcCAUCGCUGGc -3'
miRNA:   3'- -CGGUGgCAGau------GGUCUaGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 54169 0.69 0.785777
Target:  5'- cGCCACCGUCaACaAGGcugUCGUCAUCa- -3'
miRNA:   3'- -CGGUGGCAGaUGgUCU---AGUAGUGGcu -5'
18486 3' -52.8 NC_004681.1 + 30563 0.66 0.915693
Target:  5'- aCCACCGagucCUACCGGcgCAagCGCCa- -3'
miRNA:   3'- cGGUGGCa---GAUGGUCuaGUa-GUGGcu -5'
18486 3' -52.8 NC_004681.1 + 65260 0.7 0.735234
Target:  5'- aGCCAUCGcCUGCCuuguGGUCGUC-CgCGAc -3'
miRNA:   3'- -CGGUGGCaGAUGGu---CUAGUAGuG-GCU- -5'
18486 3' -52.8 NC_004681.1 + 6547 0.66 0.921727
Target:  5'- aGCCACCcc---CCAaggaGUCGUCACCGAa -3'
miRNA:   3'- -CGGUGGcagauGGUc---UAGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 56781 0.66 0.921727
Target:  5'- cCCACCuguacGUCUACCGGGUCGcccaCAUCa- -3'
miRNA:   3'- cGGUGG-----CAGAUGGUCUAGUa---GUGGcu -5'
18486 3' -52.8 NC_004681.1 + 9075 0.66 0.921727
Target:  5'- cGUCGCUGaaguaugGCCGcGUCGUCACCGGc -3'
miRNA:   3'- -CGGUGGCaga----UGGUcUAGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 39964 0.72 0.606167
Target:  5'- -gCGCgCGUCggcGCCGGGUCAacUCACCGGc -3'
miRNA:   3'- cgGUG-GCAGa--UGGUCUAGU--AGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 13087 0.66 0.921727
Target:  5'- cGCCGCUGUCUAguaCAGcgCAUU-CCGu -3'
miRNA:   3'- -CGGUGGCAGAUg--GUCuaGUAGuGGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.