miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18486 3' -52.8 NC_004681.1 + 59894 0.74 0.48983
Target:  5'- cGCCAgCGUCgacuCCA--UCGUCACCGAc -3'
miRNA:   3'- -CGGUgGCAGau--GGUcuAGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 49884 0.78 0.303448
Target:  5'- cGCCACUGcUCUACCAGG-CAggcaagcacuacUCACCGAa -3'
miRNA:   3'- -CGGUGGC-AGAUGGUCUaGU------------AGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 15920 0.68 0.82347
Target:  5'- gGCCGCgGUCaagaccauCCAGGcCAUCGCUGGc -3'
miRNA:   3'- -CGGUGgCAGau------GGUCUaGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 34863 0.68 0.841176
Target:  5'- cGCUACCGUCa---AGAUCAUCAauGAg -3'
miRNA:   3'- -CGGUGGCAGauggUCUAGUAGUggCU- -5'
18486 3' -52.8 NC_004681.1 + 49372 0.66 0.921727
Target:  5'- cGCaCACCuUCUGcgugaagcacCCAGAg-GUCACCGAg -3'
miRNA:   3'- -CG-GUGGcAGAU----------GGUCUagUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 9075 0.66 0.921727
Target:  5'- cGUCGCUGaaguaugGCCGcGUCGUCACCGGc -3'
miRNA:   3'- -CGGUGGCaga----UGGUcUAGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 56781 0.66 0.921727
Target:  5'- cCCACCuguacGUCUACCGGGUCGcccaCAUCa- -3'
miRNA:   3'- cGGUGG-----CAGAUGGUCUAGUa---GUGGcu -5'
18486 3' -52.8 NC_004681.1 + 6547 0.66 0.921727
Target:  5'- aGCCACCcc---CCAaggaGUCGUCACCGAa -3'
miRNA:   3'- -CGGUGGcagauGGUc---UAGUAGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 30563 0.66 0.915693
Target:  5'- aCCACCGagucCUACCGGcgCAagCGCCa- -3'
miRNA:   3'- cGGUGGCa---GAUGGUCuaGUa-GUGGcu -5'
18486 3' -52.8 NC_004681.1 + 61769 0.66 0.902822
Target:  5'- gGCCGCCaUCgGCCAGGagcucuaCGUCGCCa- -3'
miRNA:   3'- -CGGUGGcAGaUGGUCUa------GUAGUGGcu -5'
18486 3' -52.8 NC_004681.1 + 47205 0.66 0.902822
Target:  5'- cGCCACCGaCaacccugGCCAGuccAUCcgCACCGc -3'
miRNA:   3'- -CGGUGGCaGa------UGGUC---UAGuaGUGGCu -5'
18486 3' -52.8 NC_004681.1 + 13300 0.66 0.915693
Target:  5'- cGCC-CUGUCgaGCCuggAGAUCGagGCCGAc -3'
miRNA:   3'- -CGGuGGCAGa-UGG---UCUAGUagUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 6745 0.66 0.902822
Target:  5'- aGCCACCaUCgACCAG-UCG--GCCGAg -3'
miRNA:   3'- -CGGUGGcAGaUGGUCuAGUagUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 47108 0.66 0.902151
Target:  5'- cGCCGCCG-CUgagcgacgagaacGCCgAGggCcgCGCCGAa -3'
miRNA:   3'- -CGGUGGCaGA-------------UGG-UCuaGuaGUGGCU- -5'
18486 3' -52.8 NC_004681.1 + 23555 0.67 0.866106
Target:  5'- aCCACCGUCUcugGCaCAGuguUCGUCAgCCa- -3'
miRNA:   3'- cGGUGGCAGA---UG-GUCu--AGUAGU-GGcu -5'
18486 3' -52.8 NC_004681.1 + 10024 0.67 0.858024
Target:  5'- cGCCAUCGUggACCcguacugcGGGUCAUCGCUc- -3'
miRNA:   3'- -CGGUGGCAgaUGG--------UCUAGUAGUGGcu -5'
18486 3' -52.8 NC_004681.1 + 54890 0.67 0.849712
Target:  5'- aGCUGcCCGaCUACCAGGUCAagUACCa- -3'
miRNA:   3'- -CGGU-GGCaGAUGGUCUAGUa-GUGGcu -5'
18486 3' -52.8 NC_004681.1 + 51272 1.11 0.001981
Target:  5'- cGCCACCGUCUACCAGAUCAUCACCGAc -3'
miRNA:   3'- -CGGUGGCAGAUGGUCUAGUAGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.