miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18486 5' -57.8 NC_004681.1 + 45595 0.66 0.719925
Target:  5'- uGGCCGGUGccUCCuCCG-CGUCGg-- -3'
miRNA:   3'- -CCGGCCACucAGGcGGCuGCAGUagu -5'
18486 5' -57.8 NC_004681.1 + 12092 0.66 0.709745
Target:  5'- uGGCCGa--GGUCCGCCcGCG-CGUCu -3'
miRNA:   3'- -CCGGCcacUCAGGCGGcUGCaGUAGu -5'
18486 5' -57.8 NC_004681.1 + 15078 0.66 0.709745
Target:  5'- -aCgGGUGcGUCUGCUGACcaGUCGUCGc -3'
miRNA:   3'- ccGgCCACuCAGGCGGCUG--CAGUAGU- -5'
18486 5' -57.8 NC_004681.1 + 8515 0.66 0.709745
Target:  5'- cGGaCGGUGAGaCCGCCcccGCGgcCAUCGg -3'
miRNA:   3'- -CCgGCCACUCaGGCGGc--UGCa-GUAGU- -5'
18486 5' -57.8 NC_004681.1 + 64715 0.66 0.699496
Target:  5'- cGCUGGUGGGUCCGCCcACc------ -3'
miRNA:   3'- cCGGCCACUCAGGCGGcUGcaguagu -5'
18486 5' -57.8 NC_004681.1 + 44239 0.66 0.689187
Target:  5'- cGGCCGGUGAGggCCagGCCcGCGgCcUCGg -3'
miRNA:   3'- -CCGGCCACUCa-GG--CGGcUGCaGuAGU- -5'
18486 5' -57.8 NC_004681.1 + 10278 0.66 0.689187
Target:  5'- uGCCGGaUGAG-CUGaUCGACGUCGcCAu -3'
miRNA:   3'- cCGGCC-ACUCaGGC-GGCUGCAGUaGU- -5'
18486 5' -57.8 NC_004681.1 + 2097 0.66 0.682978
Target:  5'- cGGCCGGaUGGGUgcugggccaaucagcCCGgacaacCCGACGUcCAUCu -3'
miRNA:   3'- -CCGGCC-ACUCA---------------GGC------GGCUGCA-GUAGu -5'
18486 5' -57.8 NC_004681.1 + 46926 0.66 0.668431
Target:  5'- uGGCacuaccuaCGGUGAGgCCGCCGAC-UCGg-- -3'
miRNA:   3'- -CCG--------GCCACUCaGGCGGCUGcAGUagu -5'
18486 5' -57.8 NC_004681.1 + 55928 0.67 0.647551
Target:  5'- gGGUCGGUGAugccGagCGCCuuGAgGUCAUCGa -3'
miRNA:   3'- -CCGGCCACU----CagGCGG--CUgCAGUAGU- -5'
18486 5' -57.8 NC_004681.1 + 49525 0.67 0.605707
Target:  5'- uGGCCGGUGcAGUCCcgauuccagucgGCCuuGACuUCGUCc -3'
miRNA:   3'- -CCGGCCAC-UCAGG------------CGG--CUGcAGUAGu -5'
18486 5' -57.8 NC_004681.1 + 32668 0.67 0.604663
Target:  5'- gGGCCgacauguGGUccGGGUaccCCGCCGACGUCGcgCGg -3'
miRNA:   3'- -CCGG-------CCA--CUCA---GGCGGCUGCAGUa-GU- -5'
18486 5' -57.8 NC_004681.1 + 14603 0.68 0.595277
Target:  5'- uGGCUGGcGAGUUCgaGUCGACGggugagcgCAUCAa -3'
miRNA:   3'- -CCGGCCaCUCAGG--CGGCUGCa-------GUAGU- -5'
18486 5' -57.8 NC_004681.1 + 67073 0.68 0.595277
Target:  5'- aGGCCGacGUGAcuGUCC-CCGAUGUCGccuUCGa -3'
miRNA:   3'- -CCGGC--CACU--CAGGcGGCUGCAGU---AGU- -5'
18486 5' -57.8 NC_004681.1 + 15889 0.69 0.53354
Target:  5'- cGGCCGcGUGGGUCaccgugaagauCGCCGugGcCgcgGUCAa -3'
miRNA:   3'- -CCGGC-CACUCAG-----------GCGGCugCaG---UAGU- -5'
18486 5' -57.8 NC_004681.1 + 17921 0.69 0.503508
Target:  5'- aGGCCGGUGccuugcgcGG-CCGCCG-CGUUgauGUCGg -3'
miRNA:   3'- -CCGGCCAC--------UCaGGCGGCuGCAG---UAGU- -5'
18486 5' -57.8 NC_004681.1 + 35430 0.69 0.493659
Target:  5'- cGCgGGUGAGUCCuCCGAgGgcuUUAUCAa -3'
miRNA:   3'- cCGgCCACUCAGGcGGCUgC---AGUAGU- -5'
18486 5' -57.8 NC_004681.1 + 40070 0.71 0.399839
Target:  5'- aGCCGGUGAGUUgacccggCGCCGACG-CGcgCGg -3'
miRNA:   3'- cCGGCCACUCAG-------GCGGCUGCaGUa-GU- -5'
18486 5' -57.8 NC_004681.1 + 59998 0.71 0.399839
Target:  5'- gGGUCGGUgacgaugGAGUCgaCGCUGGCGUCuUCAg -3'
miRNA:   3'- -CCGGCCA-------CUCAG--GCGGCUGCAGuAGU- -5'
18486 5' -57.8 NC_004681.1 + 5651 0.72 0.358606
Target:  5'- aGCUGGUGAGcUUCGCCGACGaCgagGUCGu -3'
miRNA:   3'- cCGGCCACUC-AGGCGGCUGCaG---UAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.