miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18487 3' -57.4 NC_004681.1 + 62399 0.66 0.724002
Target:  5'- aCAUcCGGguacuggcaugGCUGGGCGccgacACCGCccucuccGCCGCc -3'
miRNA:   3'- aGUA-GCU-----------UGACCCGC-----UGGCGa------CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 45578 0.66 0.710654
Target:  5'- cUCGUUGAuCaGGGUGGCCagcucggaguggacGCUGUCGUu -3'
miRNA:   3'- -AGUAGCUuGaCCCGCUGG--------------CGACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 28260 0.66 0.703415
Target:  5'- gCGUCaguGCc-GGUG-CCGCUGCCGCc -3'
miRNA:   3'- aGUAGcu-UGacCCGCuGGCGACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 48794 0.66 0.703415
Target:  5'- cCGUCGAggGCgcGGGUGACaucugaugGUUGCCGUc -3'
miRNA:   3'- aGUAGCU--UGa-CCCGCUGg-------CGACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 16248 0.66 0.703415
Target:  5'- ---aUGAGCgacGGGaUGGCCGCcagcGCCGCg -3'
miRNA:   3'- aguaGCUUGa--CCC-GCUGGCGa---CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 40028 0.66 0.702378
Target:  5'- gUCGUUGAGgcGGGCGAaguacucCUGCgcaggcugGCCGCg -3'
miRNA:   3'- -AGUAGCUUgaCCCGCU-------GGCGa-------CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 2909 0.66 0.693019
Target:  5'- aCAUCcugggggccuGGCUGGGCGACgGCa-CCGCc -3'
miRNA:   3'- aGUAGc---------UUGACCCGCUGgCGacGGCG- -5'
18487 3' -57.4 NC_004681.1 + 2682 0.66 0.693019
Target:  5'- gCGUC--ACUGGcGCGACUGCUucuCCGUg -3'
miRNA:   3'- aGUAGcuUGACC-CGCUGGCGAc--GGCG- -5'
18487 3' -57.4 NC_004681.1 + 37777 0.66 0.68257
Target:  5'- ----gGAAUUGGagaaGCGACgCGCgGCCGCu -3'
miRNA:   3'- aguagCUUGACC----CGCUG-GCGaCGGCG- -5'
18487 3' -57.4 NC_004681.1 + 15407 0.66 0.68257
Target:  5'- uUCcgCGAGCUGGGagcucucguacaUGGCCgggaggaugacGUUGCCGUc -3'
miRNA:   3'- -AGuaGCUUGACCC------------GCUGG-----------CGACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 61265 0.66 0.68257
Target:  5'- cCGUCGAcccaguugccCUGGGCG-UCGCgGCgGCg -3'
miRNA:   3'- aGUAGCUu---------GACCCGCuGGCGaCGgCG- -5'
18487 3' -57.4 NC_004681.1 + 25487 0.66 0.68257
Target:  5'- aCGUgGGACUGGGuUGGUCGCUcagcggggacGCCGUa -3'
miRNA:   3'- aGUAgCUUGACCC-GCUGGCGA----------CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 66861 0.66 0.68257
Target:  5'- gCGUCGAugUaGGCGG-CGUUGCCa- -3'
miRNA:   3'- aGUAGCUugAcCCGCUgGCGACGGcg -5'
18487 3' -57.4 NC_004681.1 + 3243 0.66 0.672077
Target:  5'- cCAUCaggcccugGAGgaGGGCGAgCCGCUggGCgCGCg -3'
miRNA:   3'- aGUAG--------CUUgaCCCGCU-GGCGA--CG-GCG- -5'
18487 3' -57.4 NC_004681.1 + 32520 0.66 0.672076
Target:  5'- -gAUCGcGCUGGGUGAguucCUGgUGgCCGCu -3'
miRNA:   3'- agUAGCuUGACCCGCU----GGCgAC-GGCG- -5'
18487 3' -57.4 NC_004681.1 + 24842 0.66 0.672076
Target:  5'- gCGUCGGcgGCgcGGGCGGCgGCcGCCa- -3'
miRNA:   3'- aGUAGCU--UGa-CCCGCUGgCGaCGGcg -5'
18487 3' -57.4 NC_004681.1 + 11980 0.66 0.671025
Target:  5'- uUCGUCGucCUcGGUGACgucgguaCGCUGCgCGCg -3'
miRNA:   3'- -AGUAGCuuGAcCCGCUG-------GCGACG-GCG- -5'
18487 3' -57.4 NC_004681.1 + 1979 0.66 0.668921
Target:  5'- aCGUCGggUUguccGGGCGAUUGgCUccagcacccauccgGCCGCg -3'
miRNA:   3'- aGUAGCuuGA----CCCGCUGGC-GA--------------CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 48810 0.67 0.661548
Target:  5'- cUCGUUGAccGC-GGGCGACuCGaaGCCGa -3'
miRNA:   3'- -AGUAGCU--UGaCCCGCUG-GCgaCGGCg -5'
18487 3' -57.4 NC_004681.1 + 7491 0.67 0.661548
Target:  5'- uUCGaCGGACUuGGGCGGggGCUucuucucgGCCGCg -3'
miRNA:   3'- -AGUaGCUUGA-CCCGCUggCGA--------CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.