Results 41 - 60 of 65 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 46053 | 0.69 | 0.495346 |
Target: 5'- cCGUCGAauucuACUGGcuggacauggaaGuCGGCCGCgaaGCCGCg -3' miRNA: 3'- aGUAGCU-----UGACC------------C-GCUGGCGa--CGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 61645 | 0.7 | 0.466002 |
Target: 5'- cCAUCGccaAGCUGcGCGcagaaGCCGCcGCCGCg -3' miRNA: 3'- aGUAGC---UUGACcCGC-----UGGCGaCGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 18373 | 0.7 | 0.466002 |
Target: 5'- cCAUCGAcauggcagGCcagGcGGCGGCCGCgGCgGCa -3' miRNA: 3'- aGUAGCU--------UGa--C-CCGCUGGCGaCGgCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 30149 | 0.7 | 0.475685 |
Target: 5'- -gGUCGGGCUcaGGCGG-CGCgGCCGCg -3' miRNA: 3'- agUAGCUUGAc-CCGCUgGCGaCGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 19594 | 0.7 | 0.446948 |
Target: 5'- gUCAaCGAGCucUGGGCG--CGCUGCgGCg -3' miRNA: 3'- -AGUaGCUUG--ACCCGCugGCGACGgCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 30053 | 0.7 | 0.446948 |
Target: 5'- cCAUCGGcCUcGGaGCucCCGCUGUCGCg -3' miRNA: 3'- aGUAGCUuGA-CC-CGcuGGCGACGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 13519 | 0.7 | 0.475686 |
Target: 5'- cUCAUCGAacaGCUGcucacGGUccaGGCCGUcGCCGCg -3' miRNA: 3'- -AGUAGCU---UGAC-----CCG---CUGGCGaCGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 33876 | 0.71 | 0.419203 |
Target: 5'- cUCAUCGAAUgagacaUGGuGCGgaagcucccaGCCGCgcucgGCCGCu -3' miRNA: 3'- -AGUAGCUUG------ACC-CGC----------UGGCGa----CGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 62078 | 0.71 | 0.410189 |
Target: 5'- -gGUCGAACaGGugcaugcccGCGAUgaCGCUGCCGCc -3' miRNA: 3'- agUAGCUUGaCC---------CGCUG--GCGACGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 65334 | 0.71 | 0.410189 |
Target: 5'- uUCA-CGAGgUGcGGCaGGCCGCUGUCGg -3' miRNA: 3'- -AGUaGCUUgAC-CCG-CUGGCGACGGCg -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 33741 | 0.72 | 0.350597 |
Target: 5'- -gGUCGAACUGGaaGCGGCCGagcGCgGCu -3' miRNA: 3'- agUAGCUUGACC--CGCUGGCga-CGgCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 23664 | 0.72 | 0.375369 |
Target: 5'- cCAUCGAGCUGGccuccuacGCGcCCGCcuCCGCg -3' miRNA: 3'- aGUAGCUUGACC--------CGCuGGCGacGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 2032 | 0.72 | 0.375369 |
Target: 5'- -gGUCGuGgaGGGCGGCCGCa-CCGCg -3' miRNA: 3'- agUAGCuUgaCCCGCUGGCGacGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 3739 | 0.72 | 0.33474 |
Target: 5'- aCGUCGAagGCgaGGGCGGCCuGCuucuUGUCGCg -3' miRNA: 3'- aGUAGCU--UGa-CCCGCUGG-CG----ACGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 41134 | 0.72 | 0.375369 |
Target: 5'- cCGUCGca-UGGGUGGCUaccCUGCCGCg -3' miRNA: 3'- aGUAGCuugACCCGCUGGc--GACGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 16654 | 0.72 | 0.37876 |
Target: 5'- cUCGUCGGcaagcuGCauaccacggccgccgUGGG-GACCGUUGCCGCc -3' miRNA: 3'- -AGUAGCU------UG---------------ACCCgCUGGCGACGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 58468 | 0.72 | 0.33474 |
Target: 5'- aUCAaCGAacaGCUGGGCG-CCGCgugaaCCGCg -3' miRNA: 3'- -AGUaGCU---UGACCCGCuGGCGac---GGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 18727 | 0.73 | 0.319413 |
Target: 5'- aCAUCGccaaGGGCGACgGCggcgagGCCGCg -3' miRNA: 3'- aGUAGCuugaCCCGCUGgCGa-----CGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 8643 | 0.73 | 0.30462 |
Target: 5'- cCGUCGAACcgaagGGGUucuGGCCGaugGCCGCg -3' miRNA: 3'- aGUAGCUUGa----CCCG---CUGGCga-CGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 45367 | 0.74 | 0.276624 |
Target: 5'- gUCA-CGGGCgGGGCGuCCGgUGCUGCc -3' miRNA: 3'- -AGUaGCUUGaCCCGCuGGCgACGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home