miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18487 3' -57.4 NC_004681.1 + 37520 0.67 0.660493
Target:  5'- ---cCGGAUUGGGaugucggugcaauUGACCGUcGCCGCc -3'
miRNA:   3'- aguaGCUUGACCC-------------GCUGGCGaCGGCG- -5'
18487 3' -57.4 NC_004681.1 + 6505 0.67 0.650994
Target:  5'- cCA-CGGACUcGGGgaaGACCGa-GCCGCg -3'
miRNA:   3'- aGUaGCUUGA-CCCg--CUGGCgaCGGCG- -5'
18487 3' -57.4 NC_004681.1 + 11801 0.67 0.650994
Target:  5'- -gAUCGAACgGGGUGAaguCCGCcagGCUGg -3'
miRNA:   3'- agUAGCUUGaCCCGCU---GGCGa--CGGCg -5'
18487 3' -57.4 NC_004681.1 + 59848 0.67 0.650994
Target:  5'- uUCGUUGGagcACUGGaUGACauCGCUGCCGa -3'
miRNA:   3'- -AGUAGCU---UGACCcGCUG--GCGACGGCg -5'
18487 3' -57.4 NC_004681.1 + 27132 0.67 0.650994
Target:  5'- cCA-CGGACUcgaaGGCGACCGCguagGCgGUg -3'
miRNA:   3'- aGUaGCUUGAc---CCGCUGGCGa---CGgCG- -5'
18487 3' -57.4 NC_004681.1 + 36308 0.67 0.639366
Target:  5'- cUCAUCccuGAACUGGuggccgagguugaGCGGCUGCgGgCGCg -3'
miRNA:   3'- -AGUAG---CUUGACC-------------CGCUGGCGaCgGCG- -5'
18487 3' -57.4 NC_004681.1 + 55396 0.67 0.629847
Target:  5'- aCGUCGuccacuGCUGGGCGGUCGUaacUGacCCGCg -3'
miRNA:   3'- aGUAGCu-----UGACCCGCUGGCG---AC--GGCG- -5'
18487 3' -57.4 NC_004681.1 + 18383 0.67 0.608707
Target:  5'- -aGUCGAggACUGcGGCcguGCCGCgcccggaguUGCCGCu -3'
miRNA:   3'- agUAGCU--UGAC-CCGc--UGGCG---------ACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 29752 0.67 0.608707
Target:  5'- -uGUCGAGCgcuuccGCGACCuGCUGCCa- -3'
miRNA:   3'- agUAGCUUGacc---CGCUGG-CGACGGcg -5'
18487 3' -57.4 NC_004681.1 + 28511 0.67 0.607652
Target:  5'- cCAUCuccgcggGAGCcgGGGUGACCGCcagGCCa- -3'
miRNA:   3'- aGUAG-------CUUGa-CCCGCUGGCGa--CGGcg -5'
18487 3' -57.4 NC_004681.1 + 42203 0.68 0.602376
Target:  5'- aCGcCGAACUGGaGCGGaucaagaaccucaauCCGCacacgGCCGCc -3'
miRNA:   3'- aGUaGCUUGACC-CGCU---------------GGCGa----CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 16017 0.68 0.598161
Target:  5'- gCAUCGucccGGCUgcuggcaaGGGCGccGCCGCUGucaCCGCa -3'
miRNA:   3'- aGUAGC----UUGA--------CCCGC--UGGCGAC---GGCG- -5'
18487 3' -57.4 NC_004681.1 + 40469 0.68 0.598161
Target:  5'- aCAUUGAACgccGCGGCCGaC-GCCGCc -3'
miRNA:   3'- aGUAGCUUGaccCGCUGGC-GaCGGCG- -5'
18487 3' -57.4 NC_004681.1 + 7204 0.68 0.577157
Target:  5'- --cUCGAGaa-GGCGGCCGgUGCCGg -3'
miRNA:   3'- aguAGCUUgacCCGCUGGCgACGGCg -5'
18487 3' -57.4 NC_004681.1 + 32228 0.68 0.566714
Target:  5'- gUCGUUGGcgUGGGCcGCCGCggUGaCCGCu -3'
miRNA:   3'- -AGUAGCUugACCCGcUGGCG--AC-GGCG- -5'
18487 3' -57.4 NC_004681.1 + 50927 0.68 0.566714
Target:  5'- uUCggCGAGCUGGGUGGCgGUggGCgGg -3'
miRNA:   3'- -AGuaGCUUGACCCGCUGgCGa-CGgCg -5'
18487 3' -57.4 NC_004681.1 + 28119 0.68 0.565672
Target:  5'- cCGUCGGucuugcugccaccGCUGGuaggacuacuGCcGCCGUUGCCGCc -3'
miRNA:   3'- aGUAGCU-------------UGACC----------CGcUGGCGACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 48654 0.69 0.535706
Target:  5'- gCAgcaGGGCUGGGUG-CUGCcGUCGCg -3'
miRNA:   3'- aGUag-CUUGACCCGCuGGCGaCGGCG- -5'
18487 3' -57.4 NC_004681.1 + 31223 0.69 0.505313
Target:  5'- aCAUCGcagcguGGCUGGGgGACCGgC-GCCGa -3'
miRNA:   3'- aGUAGC------UUGACCCgCUGGC-GaCGGCg -5'
18487 3' -57.4 NC_004681.1 + 46053 0.69 0.495346
Target:  5'- cCGUCGAauucuACUGGcuggacauggaaGuCGGCCGCgaaGCCGCg -3'
miRNA:   3'- aGUAGCU-----UGACC------------C-GCUGGCGa--CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.