miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18487 3' -57.4 NC_004681.1 + 1979 0.66 0.668921
Target:  5'- aCGUCGggUUguccGGGCGAUUGgCUccagcacccauccgGCCGCg -3'
miRNA:   3'- aGUAGCuuGA----CCCGCUGGC-GA--------------CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 2032 0.72 0.375369
Target:  5'- -gGUCGuGgaGGGCGGCCGCa-CCGCg -3'
miRNA:   3'- agUAGCuUgaCCCGCUGGCGacGGCG- -5'
18487 3' -57.4 NC_004681.1 + 2682 0.66 0.693019
Target:  5'- gCGUC--ACUGGcGCGACUGCUucuCCGUg -3'
miRNA:   3'- aGUAGcuUGACC-CGCUGGCGAc--GGCG- -5'
18487 3' -57.4 NC_004681.1 + 2909 0.66 0.693019
Target:  5'- aCAUCcugggggccuGGCUGGGCGACgGCa-CCGCc -3'
miRNA:   3'- aGUAGc---------UUGACCCGCUGgCGacGGCG- -5'
18487 3' -57.4 NC_004681.1 + 3243 0.66 0.672077
Target:  5'- cCAUCaggcccugGAGgaGGGCGAgCCGCUggGCgCGCg -3'
miRNA:   3'- aGUAG--------CUUgaCCCGCU-GGCGA--CG-GCG- -5'
18487 3' -57.4 NC_004681.1 + 3739 0.72 0.33474
Target:  5'- aCGUCGAagGCgaGGGCGGCCuGCuucuUGUCGCg -3'
miRNA:   3'- aGUAGCU--UGa-CCCGCUGG-CG----ACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 6505 0.67 0.650994
Target:  5'- cCA-CGGACUcGGGgaaGACCGa-GCCGCg -3'
miRNA:   3'- aGUaGCUUGA-CCCg--CUGGCgaCGGCG- -5'
18487 3' -57.4 NC_004681.1 + 7204 0.68 0.577157
Target:  5'- --cUCGAGaa-GGCGGCCGgUGCCGg -3'
miRNA:   3'- aguAGCUUgacCCGCUGGCgACGGCg -5'
18487 3' -57.4 NC_004681.1 + 7491 0.67 0.661548
Target:  5'- uUCGaCGGACUuGGGCGGggGCUucuucucgGCCGCg -3'
miRNA:   3'- -AGUaGCUUGA-CCCGCUggCGA--------CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 8643 0.73 0.30462
Target:  5'- cCGUCGAACcgaagGGGUucuGGCCGaugGCCGCg -3'
miRNA:   3'- aGUAGCUUGa----CCCG---CUGGCga-CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 11801 0.67 0.650994
Target:  5'- -gAUCGAACgGGGUGAaguCCGCcagGCUGg -3'
miRNA:   3'- agUAGCUUGaCCCGCU---GGCGa--CGGCg -5'
18487 3' -57.4 NC_004681.1 + 11980 0.66 0.671025
Target:  5'- uUCGUCGucCUcGGUGACgucgguaCGCUGCgCGCg -3'
miRNA:   3'- -AGUAGCuuGAcCCGCUG-------GCGACG-GCG- -5'
18487 3' -57.4 NC_004681.1 + 13519 0.7 0.475686
Target:  5'- cUCAUCGAacaGCUGcucacGGUccaGGCCGUcGCCGCg -3'
miRNA:   3'- -AGUAGCU---UGAC-----CCG---CUGGCGaCGGCG- -5'
18487 3' -57.4 NC_004681.1 + 15407 0.66 0.68257
Target:  5'- uUCcgCGAGCUGGGagcucucguacaUGGCCgggaggaugacGUUGCCGUc -3'
miRNA:   3'- -AGuaGCUUGACCC------------GCUGG-----------CGACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 16017 0.68 0.598161
Target:  5'- gCAUCGucccGGCUgcuggcaaGGGCGccGCCGCUGucaCCGCa -3'
miRNA:   3'- aGUAGC----UUGA--------CCCGC--UGGCGAC---GGCG- -5'
18487 3' -57.4 NC_004681.1 + 16248 0.66 0.703415
Target:  5'- ---aUGAGCgacGGGaUGGCCGCcagcGCCGCg -3'
miRNA:   3'- aguaGCUUGa--CCC-GCUGGCGa---CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 16654 0.72 0.37876
Target:  5'- cUCGUCGGcaagcuGCauaccacggccgccgUGGG-GACCGUUGCCGCc -3'
miRNA:   3'- -AGUAGCU------UG---------------ACCCgCUGGCGACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 18373 0.7 0.466002
Target:  5'- cCAUCGAcauggcagGCcagGcGGCGGCCGCgGCgGCa -3'
miRNA:   3'- aGUAGCU--------UGa--C-CCGCUGGCGaCGgCG- -5'
18487 3' -57.4 NC_004681.1 + 18383 0.67 0.608707
Target:  5'- -aGUCGAggACUGcGGCcguGCCGCgcccggaguUGCCGCu -3'
miRNA:   3'- agUAGCU--UGAC-CCGc--UGGCG---------ACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 18727 0.73 0.319413
Target:  5'- aCAUCGccaaGGGCGACgGCggcgagGCCGCg -3'
miRNA:   3'- aGUAGCuugaCCCGCUGgCGa-----CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.