miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18487 3' -57.4 NC_004681.1 + 40028 0.66 0.702378
Target:  5'- gUCGUUGAGgcGGGCGAaguacucCUGCgcaggcugGCCGCg -3'
miRNA:   3'- -AGUAGCUUgaCCCGCU-------GGCGa-------CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 40469 0.68 0.598161
Target:  5'- aCAUUGAACgccGCGGCCGaC-GCCGCc -3'
miRNA:   3'- aGUAGCUUGaccCGCUGGC-GaCGGCG- -5'
18487 3' -57.4 NC_004681.1 + 41134 0.72 0.375369
Target:  5'- cCGUCGca-UGGGUGGCUaccCUGCCGCg -3'
miRNA:   3'- aGUAGCuugACCCGCUGGc--GACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 42203 0.68 0.602376
Target:  5'- aCGcCGAACUGGaGCGGaucaagaaccucaauCCGCacacgGCCGCc -3'
miRNA:   3'- aGUaGCUUGACC-CGCU---------------GGCGa----CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 45367 0.74 0.276624
Target:  5'- gUCA-CGGGCgGGGCGuCCGgUGCUGCc -3'
miRNA:   3'- -AGUaGCUUGaCCCGCuGGCgACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 45578 0.66 0.710654
Target:  5'- cUCGUUGAuCaGGGUGGCCagcucggaguggacGCUGUCGUu -3'
miRNA:   3'- -AGUAGCUuGaCCCGCUGG--------------CGACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 46053 0.69 0.495346
Target:  5'- cCGUCGAauucuACUGGcuggacauggaaGuCGGCCGCgaaGCCGCg -3'
miRNA:   3'- aGUAGCU-----UGACC------------C-GCUGGCGa--CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 46944 0.75 0.221193
Target:  5'- aUCAUCGGgguGCcgGGGCGguuGCCGCgggGCUGCg -3'
miRNA:   3'- -AGUAGCU---UGa-CCCGC---UGGCGa--CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 48654 0.69 0.535706
Target:  5'- gCAgcaGGGCUGGGUG-CUGCcGUCGCg -3'
miRNA:   3'- aGUag-CUUGACCCGCuGGCGaCGGCG- -5'
18487 3' -57.4 NC_004681.1 + 48794 0.66 0.703415
Target:  5'- cCGUCGAggGCgcGGGUGACaucugaugGUUGCCGUc -3'
miRNA:   3'- aGUAGCU--UGa-CCCGCUGg-------CGACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 48810 0.67 0.661548
Target:  5'- cUCGUUGAccGC-GGGCGACuCGaaGCCGa -3'
miRNA:   3'- -AGUAGCU--UGaCCCGCUG-GCgaCGGCg -5'
18487 3' -57.4 NC_004681.1 + 50927 0.68 0.566714
Target:  5'- uUCggCGAGCUGGGUGGCgGUggGCgGg -3'
miRNA:   3'- -AGuaGCUUGACCCGCUGgCGa-CGgCg -5'
18487 3' -57.4 NC_004681.1 + 51477 1.11 0.00075
Target:  5'- cUCAUCGAACUGGGCGACCGCUGCCGCc -3'
miRNA:   3'- -AGUAGCUUGACCCGCUGGCGACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 51700 0.78 0.142158
Target:  5'- ---aCGAGCUGGGCGAagccgagcCCGUUGCCGg -3'
miRNA:   3'- aguaGCUUGACCCGCU--------GGCGACGGCg -5'
18487 3' -57.4 NC_004681.1 + 55396 0.67 0.629847
Target:  5'- aCGUCGuccacuGCUGGGCGGUCGUaacUGacCCGCg -3'
miRNA:   3'- aGUAGCu-----UGACCCGCUGGCG---AC--GGCG- -5'
18487 3' -57.4 NC_004681.1 + 58468 0.72 0.33474
Target:  5'- aUCAaCGAacaGCUGGGCG-CCGCgugaaCCGCg -3'
miRNA:   3'- -AGUaGCU---UGACCCGCuGGCGac---GGCG- -5'
18487 3' -57.4 NC_004681.1 + 59848 0.67 0.650994
Target:  5'- uUCGUUGGagcACUGGaUGACauCGCUGCCGa -3'
miRNA:   3'- -AGUAGCU---UGACCcGCUG--GCGACGGCg -5'
18487 3' -57.4 NC_004681.1 + 60229 0.77 0.175512
Target:  5'- aCGUCGAGCgacuugGGGaacCCGCUGCCGUa -3'
miRNA:   3'- aGUAGCUUGa-----CCCgcuGGCGACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 61265 0.66 0.68257
Target:  5'- cCGUCGAcccaguugccCUGGGCG-UCGCgGCgGCg -3'
miRNA:   3'- aGUAGCUu---------GACCCGCuGGCGaCGgCG- -5'
18487 3' -57.4 NC_004681.1 + 61645 0.7 0.466002
Target:  5'- cCAUCGccaAGCUGcGCGcagaaGCCGCcGCCGCg -3'
miRNA:   3'- aGUAGC---UUGACcCGC-----UGGCGaCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.