Results 21 - 40 of 65 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 45367 | 0.74 | 0.276624 |
Target: 5'- gUCA-CGGGCgGGGCGuCCGgUGCUGCc -3' miRNA: 3'- -AGUaGCUUGaCCCGCuGGCgACGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 42203 | 0.68 | 0.602376 |
Target: 5'- aCGcCGAACUGGaGCGGaucaagaaccucaauCCGCacacgGCCGCc -3' miRNA: 3'- aGUaGCUUGACC-CGCU---------------GGCGa----CGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 41134 | 0.72 | 0.375369 |
Target: 5'- cCGUCGca-UGGGUGGCUaccCUGCCGCg -3' miRNA: 3'- aGUAGCuugACCCGCUGGc--GACGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 40469 | 0.68 | 0.598161 |
Target: 5'- aCAUUGAACgccGCGGCCGaC-GCCGCc -3' miRNA: 3'- aGUAGCUUGaccCGCUGGC-GaCGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 40028 | 0.66 | 0.702378 |
Target: 5'- gUCGUUGAGgcGGGCGAaguacucCUGCgcaggcugGCCGCg -3' miRNA: 3'- -AGUAGCUUgaCCCGCU-------GGCGa-------CGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 37777 | 0.66 | 0.68257 |
Target: 5'- ----gGAAUUGGagaaGCGACgCGCgGCCGCu -3' miRNA: 3'- aguagCUUGACC----CGCUG-GCGaCGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 37520 | 0.67 | 0.660493 |
Target: 5'- ---cCGGAUUGGGaugucggugcaauUGACCGUcGCCGCc -3' miRNA: 3'- aguaGCUUGACCC-------------GCUGGCGaCGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 36308 | 0.67 | 0.639366 |
Target: 5'- cUCAUCccuGAACUGGuggccgagguugaGCGGCUGCgGgCGCg -3' miRNA: 3'- -AGUAG---CUUGACC-------------CGCUGGCGaCgGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 33876 | 0.71 | 0.419203 |
Target: 5'- cUCAUCGAAUgagacaUGGuGCGgaagcucccaGCCGCgcucgGCCGCu -3' miRNA: 3'- -AGUAGCUUG------ACC-CGC----------UGGCGa----CGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 33741 | 0.72 | 0.350597 |
Target: 5'- -gGUCGAACUGGaaGCGGCCGagcGCgGCu -3' miRNA: 3'- agUAGCUUGACC--CGCUGGCga-CGgCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 32520 | 0.66 | 0.672076 |
Target: 5'- -gAUCGcGCUGGGUGAguucCUGgUGgCCGCu -3' miRNA: 3'- agUAGCuUGACCCGCU----GGCgAC-GGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 32228 | 0.68 | 0.566714 |
Target: 5'- gUCGUUGGcgUGGGCcGCCGCggUGaCCGCu -3' miRNA: 3'- -AGUAGCUugACCCGcUGGCG--AC-GGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 31223 | 0.69 | 0.505313 |
Target: 5'- aCAUCGcagcguGGCUGGGgGACCGgC-GCCGa -3' miRNA: 3'- aGUAGC------UUGACCCgCUGGC-GaCGGCg -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 30149 | 0.7 | 0.475685 |
Target: 5'- -gGUCGGGCUcaGGCGG-CGCgGCCGCg -3' miRNA: 3'- agUAGCUUGAc-CCGCUgGCGaCGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 30053 | 0.7 | 0.446948 |
Target: 5'- cCAUCGGcCUcGGaGCucCCGCUGUCGCg -3' miRNA: 3'- aGUAGCUuGA-CC-CGcuGGCGACGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 29752 | 0.67 | 0.608707 |
Target: 5'- -uGUCGAGCgcuuccGCGACCuGCUGCCa- -3' miRNA: 3'- agUAGCUUGacc---CGCUGG-CGACGGcg -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 28511 | 0.67 | 0.607652 |
Target: 5'- cCAUCuccgcggGAGCcgGGGUGACCGCcagGCCa- -3' miRNA: 3'- aGUAG-------CUUGa-CCCGCUGGCGa--CGGcg -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 28260 | 0.66 | 0.703415 |
Target: 5'- gCGUCaguGCc-GGUG-CCGCUGCCGCc -3' miRNA: 3'- aGUAGcu-UGacCCGCuGGCGACGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 28119 | 0.68 | 0.565672 |
Target: 5'- cCGUCGGucuugcugccaccGCUGGuaggacuacuGCcGCCGUUGCCGCc -3' miRNA: 3'- aGUAGCU-------------UGACC----------CGcUGGCGACGGCG- -5' |
|||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 27132 | 0.67 | 0.650994 |
Target: 5'- cCA-CGGACUcgaaGGCGACCGCguagGCgGUg -3' miRNA: 3'- aGUaGCUUGAc---CCGCUGGCGa---CGgCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home