miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18487 3' -57.4 NC_004681.1 + 55396 0.67 0.629847
Target:  5'- aCGUCGuccacuGCUGGGCGGUCGUaacUGacCCGCg -3'
miRNA:   3'- aGUAGCu-----UGACCCGCUGGCG---AC--GGCG- -5'
18487 3' -57.4 NC_004681.1 + 46053 0.69 0.495346
Target:  5'- cCGUCGAauucuACUGGcuggacauggaaGuCGGCCGCgaaGCCGCg -3'
miRNA:   3'- aGUAGCU-----UGACC------------C-GCUGGCGa--CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 21325 0.69 0.495346
Target:  5'- aUCGUCGugGACgUGGuCGACCGCaGCgGCg -3'
miRNA:   3'- -AGUAGC--UUG-ACCcGCUGGCGaCGgCG- -5'
18487 3' -57.4 NC_004681.1 + 31223 0.69 0.505313
Target:  5'- aCAUCGcagcguGGCUGGGgGACCGgC-GCCGa -3'
miRNA:   3'- aGUAGC------UUGACCCgCUGGC-GaCGGCg -5'
18487 3' -57.4 NC_004681.1 + 7204 0.68 0.577157
Target:  5'- --cUCGAGaa-GGCGGCCGgUGCCGg -3'
miRNA:   3'- aguAGCUUgacCCGCUGGCgACGGCg -5'
18487 3' -57.4 NC_004681.1 + 16017 0.68 0.598161
Target:  5'- gCAUCGucccGGCUgcuggcaaGGGCGccGCCGCUGucaCCGCa -3'
miRNA:   3'- aGUAGC----UUGA--------CCCGC--UGGCGAC---GGCG- -5'
18487 3' -57.4 NC_004681.1 + 40469 0.68 0.598161
Target:  5'- aCAUUGAACgccGCGGCCGaC-GCCGCc -3'
miRNA:   3'- aGUAGCUUGaccCGCUGGC-GaCGGCG- -5'
18487 3' -57.4 NC_004681.1 + 42203 0.68 0.602376
Target:  5'- aCGcCGAACUGGaGCGGaucaagaaccucaauCCGCacacgGCCGCc -3'
miRNA:   3'- aGUaGCUUGACC-CGCU---------------GGCGa----CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 29752 0.67 0.608707
Target:  5'- -uGUCGAGCgcuuccGCGACCuGCUGCCa- -3'
miRNA:   3'- agUAGCUUGacc---CGCUGG-CGACGGcg -5'
18487 3' -57.4 NC_004681.1 + 30149 0.7 0.475685
Target:  5'- -gGUCGGGCUcaGGCGG-CGCgGCCGCg -3'
miRNA:   3'- agUAGCUUGAc-CCGCUgGCGaCGGCG- -5'
18487 3' -57.4 NC_004681.1 + 18373 0.7 0.466002
Target:  5'- cCAUCGAcauggcagGCcagGcGGCGGCCGCgGCgGCa -3'
miRNA:   3'- aGUAGCU--------UGa--C-CCGCUGGCGaCGgCG- -5'
18487 3' -57.4 NC_004681.1 + 61645 0.7 0.466002
Target:  5'- cCAUCGccaAGCUGcGCGcagaaGCCGCcGCCGCg -3'
miRNA:   3'- aGUAGC---UUGACcCGC-----UGGCGaCGGCG- -5'
18487 3' -57.4 NC_004681.1 + 66922 0.74 0.276624
Target:  5'- gUCGUCGuugacuCUGuGGCGGCCcuGgUGCCGCg -3'
miRNA:   3'- -AGUAGCuu----GAC-CCGCUGG--CgACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 18727 0.73 0.319413
Target:  5'- aCAUCGccaaGGGCGACgGCggcgagGCCGCg -3'
miRNA:   3'- aGUAGCuugaCCCGCUGgCGa-----CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 58468 0.72 0.33474
Target:  5'- aUCAaCGAacaGCUGGGCG-CCGCgugaaCCGCg -3'
miRNA:   3'- -AGUaGCU---UGACCCGCuGGCGac---GGCG- -5'
18487 3' -57.4 NC_004681.1 + 33741 0.72 0.350597
Target:  5'- -gGUCGAACUGGaaGCGGCCGagcGCgGCu -3'
miRNA:   3'- agUAGCUUGACC--CGCUGGCga-CGgCG- -5'
18487 3' -57.4 NC_004681.1 + 23664 0.72 0.375369
Target:  5'- cCAUCGAGCUGGccuccuacGCGcCCGCcuCCGCg -3'
miRNA:   3'- aGUAGCUUGACC--------CGCuGGCGacGGCG- -5'
18487 3' -57.4 NC_004681.1 + 2032 0.72 0.375369
Target:  5'- -gGUCGuGgaGGGCGGCCGCa-CCGCg -3'
miRNA:   3'- agUAGCuUgaCCCGCUGGCGacGGCG- -5'
18487 3' -57.4 NC_004681.1 + 19594 0.7 0.446948
Target:  5'- gUCAaCGAGCucUGGGCG--CGCUGCgGCg -3'
miRNA:   3'- -AGUaGCUUG--ACCCGCugGCGACGgCG- -5'
18487 3' -57.4 NC_004681.1 + 30053 0.7 0.446948
Target:  5'- cCAUCGGcCUcGGaGCucCCGCUGUCGCg -3'
miRNA:   3'- aGUAGCUuGA-CC-CGcuGGCGACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.