miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18487 3' -57.4 NC_004681.1 + 51700 0.78 0.142158
Target:  5'- ---aCGAGCUGGGCGAagccgagcCCGUUGCCGg -3'
miRNA:   3'- aguaGCUUGACCCGCU--------GGCGACGGCg -5'
18487 3' -57.4 NC_004681.1 + 18383 0.67 0.608707
Target:  5'- -aGUCGAggACUGcGGCcguGCCGCgcccggaguUGCCGCu -3'
miRNA:   3'- agUAGCU--UGAC-CCGc--UGGCG---------ACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 27132 0.67 0.650994
Target:  5'- cCA-CGGACUcgaaGGCGACCGCguagGCgGUg -3'
miRNA:   3'- aGUaGCUUGAc---CCGCUGGCGa---CGgCG- -5'
18487 3' -57.4 NC_004681.1 + 45578 0.66 0.710654
Target:  5'- cUCGUUGAuCaGGGUGGCCagcucggaguggacGCUGUCGUu -3'
miRNA:   3'- -AGUAGCUuGaCCCGCUGG--------------CGACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 8643 0.73 0.30462
Target:  5'- cCGUCGAACcgaagGGGUucuGGCCGaugGCCGCg -3'
miRNA:   3'- aGUAGCUUGa----CCCG---CUGGCga-CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 3739 0.72 0.33474
Target:  5'- aCGUCGAagGCgaGGGCGGCCuGCuucuUGUCGCg -3'
miRNA:   3'- aGUAGCU--UGa-CCCGCUGG-CG----ACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 16654 0.72 0.37876
Target:  5'- cUCGUCGGcaagcuGCauaccacggccgccgUGGG-GACCGUUGCCGCc -3'
miRNA:   3'- -AGUAGCU------UG---------------ACCCgCUGGCGACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 65334 0.71 0.410189
Target:  5'- uUCA-CGAGgUGcGGCaGGCCGCUGUCGg -3'
miRNA:   3'- -AGUaGCUUgAC-CCG-CUGGCGACGGCg -5'
18487 3' -57.4 NC_004681.1 + 13519 0.7 0.475686
Target:  5'- cUCAUCGAacaGCUGcucacGGUccaGGCCGUcGCCGCg -3'
miRNA:   3'- -AGUAGCU---UGAC-----CCG---CUGGCGaCGGCG- -5'
18487 3' -57.4 NC_004681.1 + 28511 0.67 0.607652
Target:  5'- cCAUCuccgcggGAGCcgGGGUGACCGCcagGCCa- -3'
miRNA:   3'- aGUAG-------CUUGa-CCCGCUGGCGa--CGGcg -5'
18487 3' -57.4 NC_004681.1 + 28119 0.68 0.565672
Target:  5'- cCGUCGGucuugcugccaccGCUGGuaggacuacuGCcGCCGUUGCCGCc -3'
miRNA:   3'- aGUAGCU-------------UGACC----------CGcUGGCGACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 33876 0.71 0.419203
Target:  5'- cUCAUCGAAUgagacaUGGuGCGgaagcucccaGCCGCgcucgGCCGCu -3'
miRNA:   3'- -AGUAGCUUG------ACC-CGC----------UGGCGa----CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 60229 0.77 0.175512
Target:  5'- aCGUCGAGCgacuugGGGaacCCGCUGCCGUa -3'
miRNA:   3'- aGUAGCUUGa-----CCCgcuGGCGACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 50927 0.68 0.566714
Target:  5'- uUCggCGAGCUGGGUGGCgGUggGCgGg -3'
miRNA:   3'- -AGuaGCUUGACCCGCUGgCGa-CGgCg -5'
18487 3' -57.4 NC_004681.1 + 46944 0.75 0.221193
Target:  5'- aUCAUCGGgguGCcgGGGCGguuGCCGCgggGCUGCg -3'
miRNA:   3'- -AGUAGCU---UGa-CCCGC---UGGCGa--CGGCG- -5'
18487 3' -57.4 NC_004681.1 + 62078 0.71 0.410189
Target:  5'- -gGUCGAACaGGugcaugcccGCGAUgaCGCUGCCGCc -3'
miRNA:   3'- agUAGCUUGaCC---------CGCUG--GCGACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 32228 0.68 0.566714
Target:  5'- gUCGUUGGcgUGGGCcGCCGCggUGaCCGCu -3'
miRNA:   3'- -AGUAGCUugACCCGcUGGCG--AC-GGCG- -5'
18487 3' -57.4 NC_004681.1 + 36308 0.67 0.639366
Target:  5'- cUCAUCccuGAACUGGuggccgagguugaGCGGCUGCgGgCGCg -3'
miRNA:   3'- -AGUAG---CUUGACC-------------CGCUGGCGaCgGCG- -5'
18487 3' -57.4 NC_004681.1 + 45367 0.74 0.276624
Target:  5'- gUCA-CGGGCgGGGCGuCCGgUGCUGCc -3'
miRNA:   3'- -AGUaGCUUGaCCCGCuGGCgACGGCG- -5'
18487 3' -57.4 NC_004681.1 + 41134 0.72 0.375369
Target:  5'- cCGUCGca-UGGGUGGCUaccCUGCCGCg -3'
miRNA:   3'- aGUAGCuugACCCGCUGGc--GACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.