Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 59848 | 0.67 | 0.650994 |
Target: 5'- uUCGUUGGagcACUGGaUGACauCGCUGCCGa -3' miRNA: 3'- -AGUAGCU---UGACCcGCUG--GCGACGGCg -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 18383 | 0.67 | 0.608707 |
Target: 5'- -aGUCGAggACUGcGGCcguGCCGCgcccggaguUGCCGCu -3' miRNA: 3'- agUAGCU--UGAC-CCGc--UGGCG---------ACGGCG- -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 50927 | 0.68 | 0.566714 |
Target: 5'- uUCggCGAGCUGGGUGGCgGUggGCgGg -3' miRNA: 3'- -AGuaGCUUGACCCGCUGgCGa-CGgCg -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 37777 | 0.66 | 0.68257 |
Target: 5'- ----gGAAUUGGagaaGCGACgCGCgGCCGCu -3' miRNA: 3'- aguagCUUGACC----CGCUG-GCGaCGGCG- -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 11801 | 0.67 | 0.650994 |
Target: 5'- -gAUCGAACgGGGUGAaguCCGCcagGCUGg -3' miRNA: 3'- agUAGCUUGaCCCGCU---GGCGa--CGGCg -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 28119 | 0.68 | 0.565672 |
Target: 5'- cCGUCGGucuugcugccaccGCUGGuaggacuacuGCcGCCGUUGCCGCc -3' miRNA: 3'- aGUAGCU-------------UGACC----------CGcUGGCGACGGCG- -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 15407 | 0.66 | 0.68257 |
Target: 5'- uUCcgCGAGCUGGGagcucucguacaUGGCCgggaggaugacGUUGCCGUc -3' miRNA: 3'- -AGuaGCUUGACCC------------GCUGG-----------CGACGGCG- -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 48654 | 0.69 | 0.535706 |
Target: 5'- gCAgcaGGGCUGGGUG-CUGCcGUCGCg -3' miRNA: 3'- aGUag-CUUGACCCGCuGGCGaCGGCG- -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 48810 | 0.67 | 0.661548 |
Target: 5'- cUCGUUGAccGC-GGGCGACuCGaaGCCGa -3' miRNA: 3'- -AGUAGCU--UGaCCCGCUG-GCgaCGGCg -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 13519 | 0.7 | 0.475686 |
Target: 5'- cUCAUCGAacaGCUGcucacGGUccaGGCCGUcGCCGCg -3' miRNA: 3'- -AGUAGCU---UGAC-----CCG---CUGGCGaCGGCG- -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 36308 | 0.67 | 0.639366 |
Target: 5'- cUCAUCccuGAACUGGuggccgagguugaGCGGCUGCgGgCGCg -3' miRNA: 3'- -AGUAG---CUUGACC-------------CGCUGGCGaCgGCG- -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 28511 | 0.67 | 0.607652 |
Target: 5'- cCAUCuccgcggGAGCcgGGGUGACCGCcagGCCa- -3' miRNA: 3'- aGUAG-------CUUGa-CCCGCUGGCGa--CGGcg -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 66861 | 0.66 | 0.68257 |
Target: 5'- gCGUCGAugUaGGCGG-CGUUGCCa- -3' miRNA: 3'- aGUAGCUugAcCCGCUgGCGACGGcg -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 16248 | 0.66 | 0.703415 |
Target: 5'- ---aUGAGCgacGGGaUGGCCGCcagcGCCGCg -3' miRNA: 3'- aguaGCUUGa--CCC-GCUGGCGa---CGGCG- -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 32228 | 0.68 | 0.566714 |
Target: 5'- gUCGUUGGcgUGGGCcGCCGCggUGaCCGCu -3' miRNA: 3'- -AGUAGCUugACCCGcUGGCG--AC-GGCG- -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 31223 | 0.69 | 0.505313 |
Target: 5'- aCAUCGcagcguGGCUGGGgGACCGgC-GCCGa -3' miRNA: 3'- aGUAGC------UUGACCCgCUGGC-GaCGGCg -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 21325 | 0.69 | 0.495346 |
Target: 5'- aUCGUCGugGACgUGGuCGACCGCaGCgGCg -3' miRNA: 3'- -AGUAGC--UUG-ACCcGCUGGCGaCGgCG- -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 2032 | 0.72 | 0.375369 |
Target: 5'- -gGUCGuGgaGGGCGGCCGCa-CCGCg -3' miRNA: 3'- agUAGCuUgaCCCGCUGGCGacGGCG- -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 2909 | 0.66 | 0.693019 |
Target: 5'- aCAUCcugggggccuGGCUGGGCGACgGCa-CCGCc -3' miRNA: 3'- aGUAGc---------UUGACCCGCUGgCGacGGCG- -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 48794 | 0.66 | 0.703415 |
Target: 5'- cCGUCGAggGCgcGGGUGACaucugaugGUUGCCGUc -3' miRNA: 3'- aGUAGCU--UGa-CCCGCUGg-------CGACGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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