Results 61 - 65 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18487 | 3' | -57.4 | NC_004681.1 | + | 29752 | 0.67 | 0.608707 |
Target: 5'- -uGUCGAGCgcuuccGCGACCuGCUGCCa- -3' miRNA: 3'- agUAGCUUGacc---CGCUGG-CGACGGcg -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 42203 | 0.68 | 0.602376 |
Target: 5'- aCGcCGAACUGGaGCGGaucaagaaccucaauCCGCacacgGCCGCc -3' miRNA: 3'- aGUaGCUUGACC-CGCU---------------GGCGa----CGGCG- -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 40469 | 0.68 | 0.598161 |
Target: 5'- aCAUUGAACgccGCGGCCGaC-GCCGCc -3' miRNA: 3'- aGUAGCUUGaccCGCUGGC-GaCGGCG- -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 16017 | 0.68 | 0.598161 |
Target: 5'- gCAUCGucccGGCUgcuggcaaGGGCGccGCCGCUGucaCCGCa -3' miRNA: 3'- aGUAGC----UUGA--------CCCGC--UGGCGAC---GGCG- -5' |
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18487 | 3' | -57.4 | NC_004681.1 | + | 51477 | 1.11 | 0.00075 |
Target: 5'- cUCAUCGAACUGGGCGACCGCUGCCGCc -3' miRNA: 3'- -AGUAGCUUGACCCGCUGGCGACGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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