miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18487 5' -56.1 NC_004681.1 + 39786 0.66 0.787992
Target:  5'- --cCGCCGcGCGaCCAUCGCCUCCc--- -3'
miRNA:   3'- gauGUGGC-UGC-GGUGGUGGAGGcuuc -5'
18487 5' -56.1 NC_004681.1 + 50304 0.66 0.787992
Target:  5'- -cGCgGCCGACGCUgaacucaugGgCACCcCCGAGGa -3'
miRNA:   3'- gaUG-UGGCUGCGG---------UgGUGGaGGCUUC- -5'
18487 5' -56.1 NC_004681.1 + 55908 0.66 0.787992
Target:  5'- aCUACGCCGcgcaggucgugcGCGugcCCGCCACC-CUGGAa -3'
miRNA:   3'- -GAUGUGGC------------UGC---GGUGGUGGaGGCUUc -5'
18487 5' -56.1 NC_004681.1 + 23600 0.66 0.787992
Target:  5'- -gGCACggggGugGCCAuCCGCCUCCu--- -3'
miRNA:   3'- gaUGUGg---CugCGGU-GGUGGAGGcuuc -5'
18487 5' -56.1 NC_004681.1 + 17575 0.66 0.787992
Target:  5'- -gGCAgUGACGCCGCgGCCaagcgCCGuGGu -3'
miRNA:   3'- gaUGUgGCUGCGGUGgUGGa----GGCuUC- -5'
18487 5' -56.1 NC_004681.1 + 42157 0.66 0.787992
Target:  5'- -gAgGCCaACGCCGCUaacGCCUCCuucGAGGg -3'
miRNA:   3'- gaUgUGGcUGCGGUGG---UGGAGG---CUUC- -5'
18487 5' -56.1 NC_004681.1 + 27777 0.66 0.778403
Target:  5'- -aGCGgCGGCGCUAaggugcUCACUUCUGGAGa -3'
miRNA:   3'- gaUGUgGCUGCGGU------GGUGGAGGCUUC- -5'
18487 5' -56.1 NC_004681.1 + 1477 0.66 0.768671
Target:  5'- -gGC-CCGAUaggugGCCACCGCCUCgcaGAAc -3'
miRNA:   3'- gaUGuGGCUG-----CGGUGGUGGAGg--CUUc -5'
18487 5' -56.1 NC_004681.1 + 62236 0.66 0.768671
Target:  5'- gUGCGCgCGcauCGCCAaggucuucguCCACCgcgCCGggGg -3'
miRNA:   3'- gAUGUG-GCu--GCGGU----------GGUGGa--GGCuuC- -5'
18487 5' -56.1 NC_004681.1 + 57418 0.66 0.768671
Target:  5'- -gAUGCUGGCGUCACCcuuCCUCgGAu- -3'
miRNA:   3'- gaUGUGGCUGCGGUGGu--GGAGgCUuc -5'
18487 5' -56.1 NC_004681.1 + 17671 0.66 0.768671
Target:  5'- gCUugGCCGcgGCGUCACUGCCccagUUGAAGg -3'
miRNA:   3'- -GAugUGGC--UGCGGUGGUGGa---GGCUUC- -5'
18487 5' -56.1 NC_004681.1 + 48695 0.66 0.768671
Target:  5'- uCUugGCgGAUGCCugCcUCUgCGAGGg -3'
miRNA:   3'- -GAugUGgCUGCGGugGuGGAgGCUUC- -5'
18487 5' -56.1 NC_004681.1 + 62013 0.66 0.767691
Target:  5'- cCUAC-UCGACGCgGCCgugggacACCUCUGAc- -3'
miRNA:   3'- -GAUGuGGCUGCGgUGG-------UGGAGGCUuc -5'
18487 5' -56.1 NC_004681.1 + 14239 0.66 0.762769
Target:  5'- cCUGCACCuucugcagaagggcgGACGUCGCUGCCaugucgaaCCGAGGc -3'
miRNA:   3'- -GAUGUGG---------------CUGCGGUGGUGGa-------GGCUUC- -5'
18487 5' -56.1 NC_004681.1 + 27024 0.66 0.758808
Target:  5'- -cACACCGccuACGCgGUCGCCUUCGAGu -3'
miRNA:   3'- gaUGUGGC---UGCGgUGGUGGAGGCUUc -5'
18487 5' -56.1 NC_004681.1 + 2935 0.66 0.758808
Target:  5'- -gGCACCGccacgcGCGCCGaguUCACCagCGAGGa -3'
miRNA:   3'- gaUGUGGC------UGCGGU---GGUGGagGCUUC- -5'
18487 5' -56.1 NC_004681.1 + 60427 0.66 0.758808
Target:  5'- -aACAUCGACGCCuGCCGCa-UCGAGu -3'
miRNA:   3'- gaUGUGGCUGCGG-UGGUGgaGGCUUc -5'
18487 5' -56.1 NC_004681.1 + 53719 0.66 0.758808
Target:  5'- --uCGCCGAccuCGUCGCCAuCCUcaCCGGAGu -3'
miRNA:   3'- gauGUGGCU---GCGGUGGU-GGA--GGCUUC- -5'
18487 5' -56.1 NC_004681.1 + 40480 0.66 0.752832
Target:  5'- -cGCgGCCGACGCCGCCACgauguagcaaucgugC-CCGAc- -3'
miRNA:   3'- gaUG-UGGCUGCGGUGGUG---------------GaGGCUuc -5'
18487 5' -56.1 NC_004681.1 + 51931 0.66 0.748824
Target:  5'- -aACACuuCGACGUCGuCCAUCUCCacGGAGa -3'
miRNA:   3'- gaUGUG--GCUGCGGU-GGUGGAGG--CUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.