miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18488 3' -67.6 NC_004681.1 + 50977 0.66 0.276869
Target:  5'- uGGCaGGCCGCCUgcuugucgggguacuCGGCGgCGaGGCGc-- -3'
miRNA:   3'- gCCG-CCGGCGGG---------------GCCGC-GC-CCGUucu -5'
18488 3' -67.6 NC_004681.1 + 62956 0.66 0.268133
Target:  5'- uCGGCGGUgGUggCGGCGgCGGcGCGAGc -3'
miRNA:   3'- -GCCGCCGgCGggGCCGC-GCC-CGUUCu -5'
18488 3' -67.6 NC_004681.1 + 20480 0.66 0.26203
Target:  5'- aGGCgGGCCGUcuUCCGGCuucGGCGGGAu -3'
miRNA:   3'- gCCG-CCGGCG--GGGCCGcgcCCGUUCU- -5'
18488 3' -67.6 NC_004681.1 + 58176 0.66 0.26203
Target:  5'- gCGGCGGauG-CCCGGUauCGGGCGAGu -3'
miRNA:   3'- -GCCGCCggCgGGGCCGc-GCCCGUUCu -5'
18488 3' -67.6 NC_004681.1 + 61753 0.66 0.26203
Target:  5'- gCGGCGGCgGCUUCuGCGCGcagcuuGGCGAu- -3'
miRNA:   3'- -GCCGCCGgCGGGGcCGCGC------CCGUUcu -5'
18488 3' -67.6 NC_004681.1 + 28407 0.66 0.256041
Target:  5'- uGGCGGUCaCCCCGGCucccGCGGagauGGAg -3'
miRNA:   3'- gCCGCCGGcGGGGCCG----CGCCcgu-UCU- -5'
18488 3' -67.6 NC_004681.1 + 49535 0.66 0.256041
Target:  5'- gGGUGccgacaUCGCCCUGGCcuucccccGCGGGCAGGc -3'
miRNA:   3'- gCCGCc-----GGCGGGGCCG--------CGCCCGUUCu -5'
18488 3' -67.6 NC_004681.1 + 49342 0.66 0.250165
Target:  5'- aCGGCGG-CGCCgCgGGCGCugaccacuGGGCGc-- -3'
miRNA:   3'- -GCCGCCgGCGG-GgCCGCG--------CCCGUucu -5'
18488 3' -67.6 NC_004681.1 + 2128 0.66 0.2444
Target:  5'- gGuGCGGCCGCCCUccacgaccaccuGGC-CGcGGCcGGAu -3'
miRNA:   3'- gC-CGCCGGCGGGG------------CCGcGC-CCGuUCU- -5'
18488 3' -67.6 NC_004681.1 + 43027 0.66 0.2444
Target:  5'- uCGGCGcagcguucgcaGCCGCCaCCGGaGUGaGCAGGAu -3'
miRNA:   3'- -GCCGC-----------CGGCGG-GGCCgCGCcCGUUCU- -5'
18488 3' -67.6 NC_004681.1 + 48770 0.66 0.242692
Target:  5'- aCGGCGGCUacaccuggagugagGCCgUcgagGGCGCGGGUGAc- -3'
miRNA:   3'- -GCCGCCGG--------------CGGgG----CCGCGCCCGUUcu -5'
18488 3' -67.6 NC_004681.1 + 62614 0.67 0.238746
Target:  5'- aGGCGGCUGCCagGGUGCccauggccuGGGCcauGAu -3'
miRNA:   3'- gCCGCCGGCGGggCCGCG---------CCCGuu-CU- -5'
18488 3' -67.6 NC_004681.1 + 30067 0.67 0.238746
Target:  5'- gGGUugGGCCGaCCUGGC--GGGCAAGGg -3'
miRNA:   3'- gCCG--CCGGCgGGGCCGcgCCCGUUCU- -5'
18488 3' -67.6 NC_004681.1 + 44683 0.67 0.238746
Target:  5'- aGuGCGGCgGCCgCGaGCGCGgcGGCGAuGAg -3'
miRNA:   3'- gC-CGCCGgCGGgGC-CGCGC--CCGUU-CU- -5'
18488 3' -67.6 NC_004681.1 + 26320 0.67 0.233202
Target:  5'- gGGCGGgcaUCGCCgCCGuG-GCGGGcCAGGAc -3'
miRNA:   3'- gCCGCC---GGCGG-GGC-CgCGCCC-GUUCU- -5'
18488 3' -67.6 NC_004681.1 + 24561 0.67 0.222438
Target:  5'- gGGUGGCuCGCaCUgGGUGCGcGGCAu-- -3'
miRNA:   3'- gCCGCCG-GCG-GGgCCGCGC-CCGUucu -5'
18488 3' -67.6 NC_004681.1 + 16015 0.67 0.222438
Target:  5'- gGGCa-UCGUCCCGGCuGCuGGCAAGGg -3'
miRNA:   3'- gCCGccGGCGGGGCCG-CGcCCGUUCU- -5'
18488 3' -67.6 NC_004681.1 + 51031 0.67 0.222438
Target:  5'- gGGCGucaUCGCCCuCGGCGaCGG-CGAGAg -3'
miRNA:   3'- gCCGCc--GGCGGG-GCCGC-GCCcGUUCU- -5'
18488 3' -67.6 NC_004681.1 + 18188 0.67 0.218772
Target:  5'- uGGCGGUccuggagCGCcuCCCGGCGCacccccggguguaccGGGCGGGc -3'
miRNA:   3'- gCCGCCG-------GCG--GGGCCGCG---------------CCCGUUCu -5'
18488 3' -67.6 NC_004681.1 + 17821 0.67 0.217217
Target:  5'- gCGGCGGCCGCgcaaggcaCCGGCcucaccaaccCGGGCGc-- -3'
miRNA:   3'- -GCCGCCGGCGg-------GGCCGc---------GCCCGUucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.