miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18488 5' -51 NC_004681.1 + 19679 0.66 0.963466
Target:  5'- uGGUCggccaGAACGUCuccaucucgGUCUUCAAGGaCCa- -3'
miRNA:   3'- -CCAGa----CUUGUAG---------UAGAGGUUCC-GGcg -5'
18488 5' -51 NC_004681.1 + 37214 0.66 0.963466
Target:  5'- uGUCUGAugAaguacgCAUUcgaCAGGGCUGCg -3'
miRNA:   3'- cCAGACUugUa-----GUAGag-GUUCCGGCG- -5'
18488 5' -51 NC_004681.1 + 65794 0.66 0.963101
Target:  5'- aGGUCaUGAGCGgccuucaUCAUCUUCAGguaggcauccuGGUCGUu -3'
miRNA:   3'- -CCAG-ACUUGU-------AGUAGAGGUU-----------CCGGCG- -5'
18488 5' -51 NC_004681.1 + 13913 0.66 0.951411
Target:  5'- cGGUCaacGAguuGCGUCuaCUCCGugccgaucAGGCCGCc -3'
miRNA:   3'- -CCAGa--CU---UGUAGuaGAGGU--------UCCGGCG- -5'
18488 5' -51 NC_004681.1 + 9806 0.66 0.951411
Target:  5'- uGGUCgaGGACGagGUCgagaCCAAGGuuguCCGCa -3'
miRNA:   3'- -CCAGa-CUUGUagUAGa---GGUUCC----GGCG- -5'
18488 5' -51 NC_004681.1 + 51316 0.66 0.951411
Target:  5'- aGUCcGccGACGUCAUCaCCGucGCCGCg -3'
miRNA:   3'- cCAGaC--UUGUAGUAGaGGUucCGGCG- -5'
18488 5' -51 NC_004681.1 + 39680 0.66 0.946862
Target:  5'- cGGUCgaauuCGUCcgaugcgagCUCCucGGCCGCg -3'
miRNA:   3'- -CCAGacuu-GUAGua-------GAGGuuCCGGCG- -5'
18488 5' -51 NC_004681.1 + 12316 0.66 0.946862
Target:  5'- ---gUGAcCAUCGUgCUCCAGGaGCCGg -3'
miRNA:   3'- ccagACUuGUAGUA-GAGGUUC-CGGCg -5'
18488 5' -51 NC_004681.1 + 60577 0.67 0.936946
Target:  5'- uGGcCgacGAACGUgGUgCUCgaCGAGGCCGCc -3'
miRNA:   3'- -CCaGa--CUUGUAgUA-GAG--GUUCCGGCG- -5'
18488 5' -51 NC_004681.1 + 70441 0.67 0.9265
Target:  5'- cGUCUccgUAUCAUCUCCGccauggugguccugcGGCCGCg -3'
miRNA:   3'- cCAGAcuuGUAGUAGAGGUu--------------CCGGCG- -5'
18488 5' -51 NC_004681.1 + 24333 0.67 0.925922
Target:  5'- --gCUGggUGUCAUCUCCuggauuGGCUacgGCa -3'
miRNA:   3'- ccaGACuuGUAGUAGAGGuu----CCGG---CG- -5'
18488 5' -51 NC_004681.1 + 51171 0.67 0.919992
Target:  5'- -cUCUGGACu---UCUCUcAGGCCGUc -3'
miRNA:   3'- ccAGACUUGuaguAGAGGuUCCGGCG- -5'
18488 5' -51 NC_004681.1 + 5263 0.67 0.919384
Target:  5'- gGGUCUGAccguuagccaguaGCAUCAUUcacCCuuuggagauaGAGGCCGg -3'
miRNA:   3'- -CCAGACU-------------UGUAGUAGa--GG----------UUCCGGCg -5'
18488 5' -51 NC_004681.1 + 44315 0.68 0.9073
Target:  5'- cGGUCguacuUGAgcuuguaguGCAUCAggUCUCCAGcGGUCGUu -3'
miRNA:   3'- -CCAG-----ACU---------UGUAGU--AGAGGUU-CCGGCG- -5'
18488 5' -51 NC_004681.1 + 9984 0.68 0.900542
Target:  5'- --gCUGGGCGaaugucacuacuUCGUCUCCAcgccugcgguGGGCCGg -3'
miRNA:   3'- ccaGACUUGU------------AGUAGAGGU----------UCCGGCg -5'
18488 5' -51 NC_004681.1 + 30168 0.68 0.892074
Target:  5'- cGG-CUGAGCcugcgcgacagCGggagCUCCGAGGCCGa -3'
miRNA:   3'- -CCaGACUUGua---------GUa---GAGGUUCCGGCg -5'
18488 5' -51 NC_004681.1 + 23976 0.68 0.885473
Target:  5'- cGUCcgcGGAUGUCGUCaaucgugUCCGucAGGCCGCu -3'
miRNA:   3'- cCAGa--CUUGUAGUAG-------AGGU--UCCGGCG- -5'
18488 5' -51 NC_004681.1 + 15726 0.69 0.878659
Target:  5'- cGGUCUuccaGAGCuccAUCGUCUUCGcGGUCGUc -3'
miRNA:   3'- -CCAGA----CUUG---UAGUAGAGGUuCCGGCG- -5'
18488 5' -51 NC_004681.1 + 8773 0.69 0.870845
Target:  5'- gGGUCUacGAGCAg-GUCggCAAGGUCGCc -3'
miRNA:   3'- -CCAGA--CUUGUagUAGagGUUCCGGCG- -5'
18488 5' -51 NC_004681.1 + 58374 0.69 0.845937
Target:  5'- uGGUC-GAACAacugacgucgcUCGUCUUCGgugAGGCCaGCg -3'
miRNA:   3'- -CCAGaCUUGU-----------AGUAGAGGU---UCCGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.