miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18489 3' -55.3 NC_004681.1 + 32887 0.66 0.811254
Target:  5'- cCGAGGugguguCCcgggUCCUCUUGGAAAUCCuguuCGg -3'
miRNA:   3'- -GUUCCu-----GG----AGGGGGACCUUUAGGu---GC- -5'
18489 3' -55.3 NC_004681.1 + 21942 0.66 0.77311
Target:  5'- gAAGGACCUCUUCgUGGcgg-CCugGc -3'
miRNA:   3'- gUUCCUGGAGGGGgACCuuuaGGugC- -5'
18489 3' -55.3 NC_004681.1 + 1350 0.66 0.77311
Target:  5'- uCGGGGGCCacgaguUCCCCaucggUGGGGAUCgGCu -3'
miRNA:   3'- -GUUCCUGG------AGGGGg----ACCUUUAGgUGc -5'
18489 3' -55.3 NC_004681.1 + 50681 0.67 0.753162
Target:  5'- cCGGGGACaugaccccCCUCCUGGAGcacggcuacAUCUACGa -3'
miRNA:   3'- -GUUCCUGga------GGGGGACCUU---------UAGGUGC- -5'
18489 3' -55.3 NC_004681.1 + 43786 0.67 0.753162
Target:  5'- gCAGGGgauuuGCCUCCUUCcacGAGGUCCGCGc -3'
miRNA:   3'- -GUUCC-----UGGAGGGGGac-CUUUAGGUGC- -5'
18489 3' -55.3 NC_004681.1 + 7841 0.67 0.753162
Target:  5'- uCAAGGuCUUCgCCCUcGGGGAccUCCACc -3'
miRNA:   3'- -GUUCCuGGAGgGGGA-CCUUU--AGGUGc -5'
18489 3' -55.3 NC_004681.1 + 27787 0.67 0.732743
Target:  5'- cUAAGGugCUCaCUUCUGGAGAUgggCGCGg -3'
miRNA:   3'- -GUUCCugGAG-GGGGACCUUUAg--GUGC- -5'
18489 3' -55.3 NC_004681.1 + 21501 0.67 0.732743
Target:  5'- -cAGGACgCUCUCCUgc-AAGUCCACGa -3'
miRNA:   3'- guUCCUG-GAGGGGGaccUUUAGGUGC- -5'
18489 3' -55.3 NC_004681.1 + 42719 0.67 0.732743
Target:  5'- uGAGGGCUUCguugcacagCUCUUGGAuGUCCAUGa -3'
miRNA:   3'- gUUCCUGGAG---------GGGGACCUuUAGGUGC- -5'
18489 3' -55.3 NC_004681.1 + 4132 0.67 0.732743
Target:  5'- -cGGGuCCUCCUCCaucGGAGuguUCCGCa -3'
miRNA:   3'- guUCCuGGAGGGGGa--CCUUu--AGGUGc -5'
18489 3' -55.3 NC_004681.1 + 23603 0.67 0.722383
Target:  5'- aCGGGGguggccauccGCCUCCUCCUGGucccGUUCGCc -3'
miRNA:   3'- -GUUCC----------UGGAGGGGGACCuu--UAGGUGc -5'
18489 3' -55.3 NC_004681.1 + 51798 0.67 0.711938
Target:  5'- cCGGGGAgaaUCCCCCgcccGGAAUCCACc -3'
miRNA:   3'- -GUUCCUgg-AGGGGGac--CUUUAGGUGc -5'
18489 3' -55.3 NC_004681.1 + 49975 0.68 0.701418
Target:  5'- gAAGGGCCgcaucgUCaucaCCCUGGAGA-CCACc -3'
miRNA:   3'- gUUCCUGG------AGg---GGGACCUUUaGGUGc -5'
18489 3' -55.3 NC_004681.1 + 68075 0.68 0.690834
Target:  5'- --uGGugCcCCUCUUGGGAAUUCGCGc -3'
miRNA:   3'- guuCCugGaGGGGGACCUUUAGGUGC- -5'
18489 3' -55.3 NC_004681.1 + 18173 0.68 0.690834
Target:  5'- --cGGuccuaCUCUCCCUGGcgGUCCugGa -3'
miRNA:   3'- guuCCug---GAGGGGGACCuuUAGGugC- -5'
18489 3' -55.3 NC_004681.1 + 10644 0.68 0.690834
Target:  5'- gGAGGAuuCCUCCaccgCCUGcGGGAUuCCGCGg -3'
miRNA:   3'- gUUCCU--GGAGGg---GGAC-CUUUA-GGUGC- -5'
18489 3' -55.3 NC_004681.1 + 24161 0.69 0.637304
Target:  5'- cCAAGGGCCUguUCUCCUGGGAccuacUCgGCGu -3'
miRNA:   3'- -GUUCCUGGA--GGGGGACCUUu----AGgUGC- -5'
18489 3' -55.3 NC_004681.1 + 11760 0.69 0.605054
Target:  5'- gCGAGGACUUCCCCggUGGccgcuUCUACGa -3'
miRNA:   3'- -GUUCCUGGAGGGGg-ACCuuu--AGGUGC- -5'
18489 3' -55.3 NC_004681.1 + 17877 0.7 0.58365
Target:  5'- gGAGGACCUCCagaaGGAAuUCCugGg -3'
miRNA:   3'- gUUCCUGGAGGgggaCCUUuAGGugC- -5'
18489 3' -55.3 NC_004681.1 + 44784 0.7 0.58365
Target:  5'- -uGGGACCUCUggaccgCCCUGGAGGUgggcaagacCUACGa -3'
miRNA:   3'- guUCCUGGAGG------GGGACCUUUA---------GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.