miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18490 3' -53.9 NC_004681.1 + 62116 0.66 0.799906
Target:  5'- gCAGUcGGUGGAcGAGC-GCAucaucgGCCCCGAg -3'
miRNA:   3'- -GUCGaCUACCU-CUUGuCGU------UGGGGUU- -5'
18490 3' -53.9 NC_004681.1 + 19073 0.67 0.759568
Target:  5'- uGGgUGAUGGGGGcuuGCAcGCCCCGAa -3'
miRNA:   3'- gUCgACUACCUCUuguCGU-UGGGGUU- -5'
18490 3' -53.9 NC_004681.1 + 8496 0.67 0.759568
Target:  5'- gAGCUGAUGGGcgccuucgcGGACGGUGagaccGCCCCc- -3'
miRNA:   3'- gUCGACUACCU---------CUUGUCGU-----UGGGGuu -5'
18490 3' -53.9 NC_004681.1 + 37173 0.67 0.749119
Target:  5'- uCGGCUGGuucugaggccgcUGG-GAugAGCcACCCCAu -3'
miRNA:   3'- -GUCGACU------------ACCuCUugUCGuUGGGGUu -5'
18490 3' -53.9 NC_004681.1 + 19944 0.67 0.738549
Target:  5'- gGGCUcGGUGuAGGACAGC-ACCUCGAa -3'
miRNA:   3'- gUCGA-CUACcUCUUGUCGuUGGGGUU- -5'
18490 3' -53.9 NC_004681.1 + 31806 0.67 0.727868
Target:  5'- gAGCgcGAUGGAGGGCuGGUGACCCa-- -3'
miRNA:   3'- gUCGa-CUACCUCUUG-UCGUUGGGguu -5'
18490 3' -53.9 NC_004681.1 + 1067 0.68 0.71709
Target:  5'- aCGGCccGAUGGAGcccuGGCAGCGcgagcGCCUCAAg -3'
miRNA:   3'- -GUCGa-CUACCUC----UUGUCGU-----UGGGGUU- -5'
18490 3' -53.9 NC_004681.1 + 32705 0.68 0.710581
Target:  5'- gCGGCUGGUGGAuGAggaccucuuccgcugGCAGCcugugugguACCCCGc -3'
miRNA:   3'- -GUCGACUACCU-CU---------------UGUCGu--------UGGGGUu -5'
18490 3' -53.9 NC_004681.1 + 24961 0.69 0.651019
Target:  5'- -uGCUGGUGaGGGAGCcuuGGCGGCCgCCGc -3'
miRNA:   3'- guCGACUAC-CUCUUG---UCGUUGG-GGUu -5'
18490 3' -53.9 NC_004681.1 + 32285 0.69 0.63988
Target:  5'- uGGg-GGUGGAGcucAACGGCGACCCCc- -3'
miRNA:   3'- gUCgaCUACCUC---UUGUCGUUGGGGuu -5'
18490 3' -53.9 NC_004681.1 + 1555 0.72 0.466849
Target:  5'- uCAGCUGGgcggcgGGGGAGaggaAGaCGGCCCCAAg -3'
miRNA:   3'- -GUCGACUa-----CCUCUUg---UC-GUUGGGGUU- -5'
18490 3' -53.9 NC_004681.1 + 24881 0.72 0.436901
Target:  5'- cCAGCaaugGcGAGGGCGGCGACCCCGg -3'
miRNA:   3'- -GUCGacuaC-CUCUUGUCGUUGGGGUu -5'
18490 3' -53.9 NC_004681.1 + 52066 1.06 0.00231
Target:  5'- cCAGCUGAUGGAGAACAGCAACCCCAAg -3'
miRNA:   3'- -GUCGACUACCUCUUGUCGUUGGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.