miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18490 5' -53.2 NC_004681.1 + 36214 0.65 0.885178
Target:  5'- gGCgCAAgAUUGCccGCGCAUUcgaugggagcacguUCCCGCAc -3'
miRNA:   3'- gUG-GUUgUAACG--CGUGUAG--------------AGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 8382 0.66 0.882929
Target:  5'- uGgCGGCGUccGCGCcaccgaggcucuucaGCAUCUCCUGCGc -3'
miRNA:   3'- gUgGUUGUAa-CGCG---------------UGUAGAGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 54273 0.66 0.879894
Target:  5'- cCGCCGAagagGCGCugGUC-CUCGCc -3'
miRNA:   3'- -GUGGUUguaaCGCGugUAGaGGGCGu -5'
18490 5' -53.2 NC_004681.1 + 31993 0.66 0.872127
Target:  5'- uCGCCAGCAUcgGCucGCugAUCggCgCCGCGg -3'
miRNA:   3'- -GUGGUUGUAa-CG--CGugUAGa-G-GGCGU- -5'
18490 5' -53.2 NC_004681.1 + 44112 0.66 0.855849
Target:  5'- -cCCAGCGcUUG-GUGCAUUUUCCGCAg -3'
miRNA:   3'- guGGUUGU-AACgCGUGUAGAGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 49357 0.66 0.855849
Target:  5'- gCGCUGACcacuggGCGCACAcCUUCUGCGu -3'
miRNA:   3'- -GUGGUUGuaa---CGCGUGUaGAGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 39832 0.66 0.855849
Target:  5'- gACC-GCAccGCGCGCAcCgcgCCCGCGc -3'
miRNA:   3'- gUGGuUGUaaCGCGUGUaGa--GGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 74170 0.67 0.820537
Target:  5'- gGCCAACAgguggccaGCGCaACGUUUCuguCCGCAg -3'
miRNA:   3'- gUGGUUGUaa------CGCG-UGUAGAG---GGCGU- -5'
18490 5' -53.2 NC_004681.1 + 22491 0.67 0.811187
Target:  5'- cCACCAuCAUcgGCGCcucggACGUaucgggaaCUCCCGCAg -3'
miRNA:   3'- -GUGGUuGUAa-CGCG-----UGUA--------GAGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 36138 0.67 0.811187
Target:  5'- cCGCCAcuucuCGUcuucgguuucgGCGCACAgCUCCCGUAu -3'
miRNA:   3'- -GUGGUu----GUAa----------CGCGUGUaGAGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 62404 0.67 0.811187
Target:  5'- cCACCAGuCggUGCGCuuccaUCCCGCGu -3'
miRNA:   3'- -GUGGUU-GuaACGCGuguagAGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 17297 0.68 0.782045
Target:  5'- aCGCCcuGCug-GCGCGCGUg-CCCGCGg -3'
miRNA:   3'- -GUGGu-UGuaaCGCGUGUAgaGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 6072 0.68 0.782045
Target:  5'- -uCCAACAUcucggcgcagaUGCGCGCGUuCUaCCGCGa -3'
miRNA:   3'- guGGUUGUA-----------ACGCGUGUA-GAgGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 27820 0.68 0.772003
Target:  5'- gCGCCAACGgugGCGCAucCGUCuucucaUCCgGCAg -3'
miRNA:   3'- -GUGGUUGUaa-CGCGU--GUAG------AGGgCGU- -5'
18490 5' -53.2 NC_004681.1 + 22144 0.68 0.755638
Target:  5'- uCGCCGAUgaacacuuggacuugGUUGCGCGCG-CUCgCGCu -3'
miRNA:   3'- -GUGGUUG---------------UAACGCGUGUaGAGgGCGu -5'
18490 5' -53.2 NC_004681.1 + 5974 0.68 0.751494
Target:  5'- aGCCAGCG-UGCGCGCGgucgaacugUUCgCGCAg -3'
miRNA:   3'- gUGGUUGUaACGCGUGUa--------GAGgGCGU- -5'
18490 5' -53.2 NC_004681.1 + 26603 0.68 0.751494
Target:  5'- gCACCAACGgcguugGCGUccagacguucucGCAgauUUUCCCGCAg -3'
miRNA:   3'- -GUGGUUGUaa----CGCG------------UGU---AGAGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 32692 0.68 0.745242
Target:  5'- cCGCCGACGUcGCGCggcugguggaugaggACcUCUUCCGCu -3'
miRNA:   3'- -GUGGUUGUAaCGCG---------------UGuAGAGGGCGu -5'
18490 5' -53.2 NC_004681.1 + 22748 0.68 0.741051
Target:  5'- uGCgGACGUaggcgaucugcuUGCGCGCGgcgCUgCCCGCGg -3'
miRNA:   3'- gUGgUUGUA------------ACGCGUGUa--GA-GGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 13324 0.69 0.719845
Target:  5'- gGCCGACAacgGCGaagucuuCGUCaUCCCGCAu -3'
miRNA:   3'- gUGGUUGUaa-CGCgu-----GUAG-AGGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.