miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18490 5' -53.2 NC_004681.1 + 52104 1.09 0.002192
Target:  5'- gCACCAACAUUGCGCACAUCUCCCGCAg -3'
miRNA:   3'- -GUGGUUGUAACGCGUGUAGAGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 46761 0.74 0.440854
Target:  5'- gACCGGCGcUGCGCGCGcacggcgucacggUCaUCCCGCGc -3'
miRNA:   3'- gUGGUUGUaACGCGUGU-------------AG-AGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 38893 0.72 0.555664
Target:  5'- gGCgGAC-UUGCGCGCGg--CCCGCAg -3'
miRNA:   3'- gUGgUUGuAACGCGUGUagaGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 10846 0.71 0.59934
Target:  5'- cCGCCGcgAUUGCG-ACcUCUCCCGCGg -3'
miRNA:   3'- -GUGGUugUAACGCgUGuAGAGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 51020 0.7 0.63242
Target:  5'- gACCGACGaUGCaGCAgGgcUCUCCCGUg -3'
miRNA:   3'- gUGGUUGUaACG-CGUgU--AGAGGGCGu -5'
18490 5' -53.2 NC_004681.1 + 58565 0.7 0.642356
Target:  5'- gGCCAGCGUcaagcucgaUGCggagaccGCGCGUCUCCUGUc -3'
miRNA:   3'- gUGGUUGUA---------ACG-------CGUGUAGAGGGCGu -5'
18490 5' -53.2 NC_004681.1 + 17386 0.7 0.647872
Target:  5'- gCGCCAGCAggGCGU-CGUCUccgggauacccgccgCCCGCGu -3'
miRNA:   3'- -GUGGUUGUaaCGCGuGUAGA---------------GGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 21517 0.7 0.676472
Target:  5'- gCGCCAGCAccUUGCccaGgACGcUCUCCUGCAa -3'
miRNA:   3'- -GUGGUUGU--AACG---CgUGU-AGAGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 29934 0.69 0.684131
Target:  5'- gCGCCAACAggggcaaGCGCGCcgCguuggaugccgagcUCCCGCGc -3'
miRNA:   3'- -GUGGUUGUaa-----CGCGUGuaG--------------AGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 57503 0.69 0.698288
Target:  5'- aCGCCAGCAUcgcggaGCGCGCugagaugUUCCUGCGc -3'
miRNA:   3'- -GUGGUUGUAa-----CGCGUGua-----GAGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 13324 0.69 0.719845
Target:  5'- gGCCGACAacgGCGaagucuuCGUCaUCCCGCAu -3'
miRNA:   3'- gUGGUUGUaa-CGCgu-----GUAG-AGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 22748 0.68 0.741051
Target:  5'- uGCgGACGUaggcgaucugcuUGCGCGCGgcgCUgCCCGCGg -3'
miRNA:   3'- gUGgUUGUA------------ACGCGUGUa--GA-GGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 32692 0.68 0.745242
Target:  5'- cCGCCGACGUcGCGCggcugguggaugaggACcUCUUCCGCu -3'
miRNA:   3'- -GUGGUUGUAaCGCG---------------UGuAGAGGGCGu -5'
18490 5' -53.2 NC_004681.1 + 5974 0.68 0.751494
Target:  5'- aGCCAGCG-UGCGCGCGgucgaacugUUCgCGCAg -3'
miRNA:   3'- gUGGUUGUaACGCGUGUa--------GAGgGCGU- -5'
18490 5' -53.2 NC_004681.1 + 26603 0.68 0.751494
Target:  5'- gCACCAACGgcguugGCGUccagacguucucGCAgauUUUCCCGCAg -3'
miRNA:   3'- -GUGGUUGUaa----CGCG------------UGU---AGAGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 22144 0.68 0.755638
Target:  5'- uCGCCGAUgaacacuuggacuugGUUGCGCGCG-CUCgCGCu -3'
miRNA:   3'- -GUGGUUG---------------UAACGCGUGUaGAGgGCGu -5'
18490 5' -53.2 NC_004681.1 + 27820 0.68 0.772003
Target:  5'- gCGCCAACGgugGCGCAucCGUCuucucaUCCgGCAg -3'
miRNA:   3'- -GUGGUUGUaa-CGCGU--GUAG------AGGgCGU- -5'
18490 5' -53.2 NC_004681.1 + 6072 0.68 0.782045
Target:  5'- -uCCAACAUcucggcgcagaUGCGCGCGUuCUaCCGCGa -3'
miRNA:   3'- guGGUUGUA-----------ACGCGUGUA-GAgGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 17297 0.68 0.782045
Target:  5'- aCGCCcuGCug-GCGCGCGUg-CCCGCGg -3'
miRNA:   3'- -GUGGu-UGuaaCGCGUGUAgaGGGCGU- -5'
18490 5' -53.2 NC_004681.1 + 22491 0.67 0.811187
Target:  5'- cCACCAuCAUcgGCGCcucggACGUaucgggaaCUCCCGCAg -3'
miRNA:   3'- -GUGGUuGUAa-CGCG-----UGUA--------GAGGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.