Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18490 | 5' | -53.2 | NC_004681.1 | + | 57503 | 0.69 | 0.698288 |
Target: 5'- aCGCCAGCAUcgcggaGCGCGCugagaugUUCCUGCGc -3' miRNA: 3'- -GUGGUUGUAa-----CGCGUGua-----GAGGGCGU- -5' |
|||||||
18490 | 5' | -53.2 | NC_004681.1 | + | 29934 | 0.69 | 0.684131 |
Target: 5'- gCGCCAACAggggcaaGCGCGCcgCguuggaugccgagcUCCCGCGc -3' miRNA: 3'- -GUGGUUGUaa-----CGCGUGuaG--------------AGGGCGU- -5' |
|||||||
18490 | 5' | -53.2 | NC_004681.1 | + | 21517 | 0.7 | 0.676472 |
Target: 5'- gCGCCAGCAccUUGCccaGgACGcUCUCCUGCAa -3' miRNA: 3'- -GUGGUUGU--AACG---CgUGU-AGAGGGCGU- -5' |
|||||||
18490 | 5' | -53.2 | NC_004681.1 | + | 17386 | 0.7 | 0.647872 |
Target: 5'- gCGCCAGCAggGCGU-CGUCUccgggauacccgccgCCCGCGu -3' miRNA: 3'- -GUGGUUGUaaCGCGuGUAGA---------------GGGCGU- -5' |
|||||||
18490 | 5' | -53.2 | NC_004681.1 | + | 58565 | 0.7 | 0.642356 |
Target: 5'- gGCCAGCGUcaagcucgaUGCggagaccGCGCGUCUCCUGUc -3' miRNA: 3'- gUGGUUGUA---------ACG-------CGUGUAGAGGGCGu -5' |
|||||||
18490 | 5' | -53.2 | NC_004681.1 | + | 51020 | 0.7 | 0.63242 |
Target: 5'- gACCGACGaUGCaGCAgGgcUCUCCCGUg -3' miRNA: 3'- gUGGUUGUaACG-CGUgU--AGAGGGCGu -5' |
|||||||
18490 | 5' | -53.2 | NC_004681.1 | + | 10846 | 0.71 | 0.59934 |
Target: 5'- cCGCCGcgAUUGCG-ACcUCUCCCGCGg -3' miRNA: 3'- -GUGGUugUAACGCgUGuAGAGGGCGU- -5' |
|||||||
18490 | 5' | -53.2 | NC_004681.1 | + | 38893 | 0.72 | 0.555664 |
Target: 5'- gGCgGAC-UUGCGCGCGg--CCCGCAg -3' miRNA: 3'- gUGgUUGuAACGCGUGUagaGGGCGU- -5' |
|||||||
18490 | 5' | -53.2 | NC_004681.1 | + | 46761 | 0.74 | 0.440854 |
Target: 5'- gACCGGCGcUGCGCGCGcacggcgucacggUCaUCCCGCGc -3' miRNA: 3'- gUGGUUGUaACGCGUGU-------------AG-AGGGCGU- -5' |
|||||||
18490 | 5' | -53.2 | NC_004681.1 | + | 52104 | 1.09 | 0.002192 |
Target: 5'- gCACCAACAUUGCGCACAUCUCCCGCAg -3' miRNA: 3'- -GUGGUUGUAACGCGUGUAGAGGGCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home